Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02387 ATGGCTAGATGTACGTTTGTGGCTATATTTCAACAGATATTCATAATATCCTTTTCCAGGCCTGAGTTGCGGGATAAATGTTACCATCTGGGGGACGTGACAACAACTAAAGGAAATGAGTATGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCAATTCAAGAAGAAAGCATTCCAATTTCCCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCGTTTTGCATTCCTGCATTAGAAAAAATTGATCAAGATAATAATATTATTCAAGTTGTTATACTGGTTCCAACACAAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGACATTATGCGTTTATATCAACCGTTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTTTGCGTTCTAAAAGATTGTTCTATGCTTGTCATGGATGAGGCGGATAAACTTCTCTCCCAGGTACATTTCCTCAAACCGTCAAATCCTAATAGAGCAGCTGATTAA 633 0.3934 MARCTFVAIFQQIFIISFSRPELRDKCYHLGDVTTTKGNEYEDYFLKRELLMGIYEKGFERPSPIQEESIPISLTGSDILARAKNGTGKTAAFCIPALEKIDQDNNIIQVVILVPTQELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPFHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQVHFLKPSNPNRAAD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02387 210 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 30 199 - -
Trre10g02387 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 196 IPR027417 -
Trre10g02387 210 CDD DEADc_DDX6 41 196 - -
Trre10g02387 210 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Trre10g02387 210 Pfam DEAD/DEAH box helicase 64 196 IPR011545 GO:0003676|GO:0005524
Trre10g02387 210 SMART ultradead3 58 210 IPR014001 -
Trre10g02387 210 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 207 IPR014001 -
Trre10g02387 210 Gene3D - 25 206 IPR027417 -
Trre10g02387 210 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02387 Trre-Chr10 29213203 29214830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02387 35 196 Eukaryotic Initiation Factors Gene Family AT3G19760 37.349 2.37e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02387 K12614 - rvl:131333106 318.161