Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02361 ATGAACCATTTCACTACTAACGTTCCATCATTCCCGGCTGGGCTGAAAGTCCTTGCAGTTGATCATGACACAGATGTTCTCTGCACTATTCACCACATCTGCAATCGATTACGCTATCAAGTTACCACATGTTGTACTATTTCTCAGGCAATGGATCACTTGTTCCAACAAGGTTTTGACATCATTCTCATTGAAACTCATATTCCACACCAGGATACTTATGCTTTTGTTCAACAAATGACTTCACTTTTGAAAATTCCGGTCATTATGATGTCTCTTGATAACCAACCATGTTCTGTTATGAATTCCATTTCCAACGGGGCTTGCAGTTATTGGACTAAACCATTACATGAGAATCTATTCAAGAATATGTGGCAACATGTTGTGCGAAAGGCTTTCAGCCAAACTGATCCACGTGAACTCATCGAGGCTAAAGGGCTTAAAAAGCGAGGAAGAGATGATGTTGTTCATGTTTCAAAACAACCTCTTGCAAAGAAAACTCGTCTCGAGGCTAAAGGGCTTAAAAAGCAAGGAAGAGATGATGTTCATGTTTCAAAACAACCTCTTGCAAAGAAAACTCGTCTCTCTTGGACACTTGATTTGCACCAAAAATTTCTGTCAGCTGTGAATCATCTTGGGATTAACAATGCAGTGCCTAAAAAAGTTCTTAAGATCATGGACTGTCCTGGCTTGACATTAGGGCATGTTGCTAGTCATTTGCAGAAATATAGAAAGTATTTAAAAGGTGGGATAAAAAAGTCAAAGTTGAATCAATTTGAATTTCAAGGTCAGAAGGACAATGAAACACAATACTCAATGACGGCACAGGATCAATGTCACGATAAAAGTCCTGAAGAACAACATTCGACAGAAATTTATTTTGATTTTCAAGGTCAGAAGAACAATGAAACACAATACTCAATGACGGAACAGGATCAATGTCATGATAAAAGTCCTGCAGAACAGCATTGGACAGAAATTGACGATTCCGACATATTTTTTGACTTGACCGATTTATTCCCCGATTTTAACGATGATATACACAATGTGATGTCGTGA 1059 0.3834 MNHFTTNVPSFPAGLKVLAVDHDTDVLCTIHHICNRLRYQVTTCCTISQAMDHLFQQGFDIILIETHIPHQDTYAFVQQMTSLLKIPVIMMSLDNQPCSVMNSISNGACSYWTKPLHENLFKNMWQHVVRKAFSQTDPRELIEAKGLKKRGRDDVVHVSKQPLAKKTRLEAKGLKKQGRDDVHVSKQPLAKKTRLSWTLDLHQKFLSAVNHLGINNAVPKKVLKIMDCPGLTLGHVASHLQKYRKYLKGGIKKSKLNQFEFQGQKDNETQYSMTAQDQCHDKSPEEQHSTEIYFDFQGQKNNETQYSMTEQDQCHDKSPAEQHWTEIDDSDIFFDLTDLFPDFNDDIHNVMS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02361 352 SUPERFAMILY Homeodomain-like 190 248 IPR009057 -
Trre10g02361 352 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Trre10g02361 352 Gene3D - 189 249 - -
Trre10g02361 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 248 IPR017930 -
Trre10g02361 352 SMART REC_2 15 125 IPR001789 GO:0000160
Trre10g02361 352 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 281 IPR045279 GO:0009736
Trre10g02361 352 FunFam Two-component response regulator 189 249 - -
Trre10g02361 352 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
Trre10g02361 352 Gene3D - 12 135 - -
Trre10g02361 352 Pfam Response regulator receiver domain 17 121 IPR001789 GO:0000160
Trre10g02361 352 Pfam Myb-like DNA-binding domain 195 244 IPR001005 -
Trre10g02361 352 SUPERFAMILY CheY-like 14 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02361 Trre-Chr10 28601752 28603215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02361 11 248 Response Regulator Gene Family AT4G31920 35.417 1.38e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre10g02361 Response_reg 5.6e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02361 - - tpra:123909232 401.364