Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02360 ATGGAGACAAACGGTGTCGTTTCTATTGGTGTTGATTCTCATGAAGTTCATGTTTTGGCTGTTGATGATAGTCTTGTTGATCGGAAAGTTATTGAACGGTTGCTCAAAATTTCAGCTTGTAAAGTTACTGCTGTGGATAGTGGAATGAGAGCACTACAATTTCTGGGGTTGGATGAACAGAGAAAGACTTCTGATTCTGAATCAGATGATTTTGTGCCGGGTTTGAAGGTGGATCTAGTCATTACAGATTATTGCATGCCAGGAATGACTGGTTATGAGTTGCTAAAGAAAATCAAGGAATCATCCACTTTTAAAGAAATTCCTGTAGTGATTATGTCTTCTGAAAACATTTTGCCACGCATAGACAGATGTTTGGAGGAAGGAGCGGAGGATTTTATAGTGAAGCCAGTGAAATTATCAGACGTGAAACGTTTGAAGGGTTACATGACAACTAGGGACGTTAGAGCGGGAAGCCAAGAAAACAGAGAACTTAACGTTAACGATAACGGTAACAGTGGAGGTGGTGTAGTAGGGATCAACAACAAAAGAAAGCTAGAAGAAACATCTGATCTCTCATCATCATCACCATCCAATTCATCATCTTCATCACCATCGTCCATTTCATCATCACCGTCACCTTCATCATCTCCTATGTCTTCACCCTGCATGCTTGATTCTCCAATCCGACGGCTTAAAATGACCGGCACCGAATGA 714 0.4104 METNGVVSIGVDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGMRALQFLGLDEQRKTSDSESDDFVPGLKVDLVITDYCMPGMTGYELLKKIKESSTFKEIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDVRAGSQENRELNVNDNGNSGGGVVGINNKRKLEETSDLSSSSPSNSSSSSPSSISSSPSPSSSPMSSPCMLDSPIRRLKMTGTE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02360 237 CDD REC_typeA_ARR 18 145 - -
Trre10g02360 237 MobiDBLite consensus disorder prediction 154 237 - -
Trre10g02360 237 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 197 IPR045279 GO:0009736
Trre10g02360 237 Pfam Response regulator receiver domain 18 142 IPR001789 GO:0000160
Trre10g02360 237 SUPERFAMILY CheY-like 16 144 IPR011006 -
Trre10g02360 237 SMART REC_2 16 149 IPR001789 GO:0000160
Trre10g02360 237 MobiDBLite consensus disorder prediction 190 222 - -
Trre10g02360 237 MobiDBLite consensus disorder prediction 160 176 - -
Trre10g02360 237 ProSiteProfiles Response regulatory domain profile. 17 150 IPR001789 GO:0000160
Trre10g02360 237 Gene3D - 16 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02360 Trre-Chr10 28573087 28574586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02360 11 229 Response Regulator Gene Family AT1G59940 54.867 9.97e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre10g02360 Response_reg 4.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02360 K14492 - gmx:100787696 287.73