Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02309 ATGGAAAAGGAAATGTGTGATATTTCTGTTGAGAAGAGGCTTAGACTATTTGGTTTTGAGCTAAATCCAACAAAGACTAATAATGAATTAGGACTTGTCAAAGAGTCTAATGAAGGAGATGAAAGTGTAAATTCATCTAACTCAATTTCATCAGGAGGAGAGAAAACTGTCCATGAAAAAAATTCATCTAGAGACCAAGATGAGAGAAAATTTGAGTGTCAATATTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCACACAAAAAAGAAAGAATGAAGAAGAAAAGATTGCAACTCCAAGCTAGAAAAGCTAGCATAAATTATTACTTACAACCTTTTCAAAAAAATCATCATGGTTTTTCTTACCATGGTTCTGATACTCATTGGTTTTATGACCCTTCTTCTTATAATTCTGAATTTTCTTTGTGTGAAGAATCTCAAATTAGTTTCAAGTCAAAAAATGTTCATGATACCAATTCTAGTTGGTATTCTCTTCCTTCTCATGTTCCTAGTTCCCAACAAGATACTTGCATGTTTACTCTTTCTAATATTGATGATAGGCCTTTCATTTTCAACCCTTCTTTAAACCAAAGTCATAGTAAAGCTTTGGATCTTCAATTAGGACTCACTTTGGAGTCAAATTCAATAAGCTCTTTAAAAAGGACATAG 687 0.3246 MEKEMCDISVEKRLRLFGFELNPTKTNNELGLVKESNEGDESVNSSNSISSGGEKTVHEKNSSRDQDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINYYLQPFQKNHHGFSYHGSDTHWFYDPSSYNSEFSLCEESQISFKSKNVHDTNSSWYSLPSHVPSSQQDTCMFTLSNIDDRPFIFNPSLNQSHSKALDLQLGLTLESNSISSLKRT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02309 228 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Trre10g02309 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Trre10g02309 228 MobiDBLite consensus disorder prediction 33 65 - -
Trre10g02309 228 PANTHER ZINC FINGER PROTEIN 5 10 218 IPR044299 GO:0010090
Trre10g02309 228 MobiDBLite consensus disorder prediction 33 56 - -
Trre10g02309 228 FunFam zinc finger protein 5 45 124 - -
Trre10g02309 228 Gene3D Classic Zinc Finger 45 124 - -
Trre10g02309 228 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02309 Trre-Chr10 27719547 27720233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02309 68 177 C2H2 Transcription Factor Family AT1G68360 42.478 2.87e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g02309 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02309 - - gmx:100799857 278.485