Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02308 ATGCCGGGACGTCGGTCGAAGTCGGAGAACAAAGATGACGGCGAGAAACAGCTCCGGCGAGACCCGTATGAAGTCCTCGGCGTTTCTCGTAATTCCACTGATCAAGAAATTAAATCTGCTTACCGGAAAATGGCTCTTAAGTTTCATCCAGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTCAAAGAGGCTACCTTTTCTTACAATATCTTGTCGGATCCGGACAAACGCCGTCAGTATGACTCATCTGGCTTTGAGGCCGTTGAATCAGATAGCCAAGAGTTAGAGTTGGATCTATCAAGTTTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGCAAACTTGGTGTACCAATTAAGACAACTGTTTCTGCGACTGTTTTGGAAGAGGCACTCAATGGATTAGTTTCAATTCGTCCACTTCCATTGGGACAATTCATATCTAGAAGGGTTGAGAAGCAATGTGCACATTTCTATTCAGTTACAATAACCGAAGAGGAAGCAAGAGCTGGATTTGTTTGTCGAGTGCAATCATCAGACAAAAGCAAGTTTAAGTTACTGTATTTCGACCAGGAAGACAATGGTGGCTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAAATGGGAAGGTTACATCTGCTGGAATGTATTTTCTTGGGTTTCCTGTTTATCGGTTGGATCAAACAATGAACTCAATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAAAAAACTCGATGGGTTTCAGCCATGTGAATTAACTGAATTGAAGGCTGGTACCCATACATTTGCAGTTTATGGCGACAATTTTTTCAAAAGTGCAACCTATACAATAGAAGTCCTGTGTGCTGCCCCTTTTAGCGAAGAAAAAGAAAATTTAAGAAGCGTCGAAGCTCAAATTTTGTCTAAAAGAGCTGAAATATCAAAGTTCGAATCAGAATATCGAGAGGTTCTTGCACAATTCACAGAAATGACAAGCAGATATGCACATGAAATGCAAACAATTGACGAGCTATTGAAACAAAGAAATGAAATACATGCTACGTACACAGTTGTTCCTTTAAAGCGAAGTAATAGCAGCAAGGGCAGAAGTAAAACATCTTCAAAGGAGTCGTCAAAAGAAGATGGCGAAGCAAGAGAAAAAAGGAGTACAAGAGAACGACCTAGGAAGAAAAAATGGTATAACCTCCACTTAAGAGTTGACAAGAGAAAGGCTTGCTAA 1236 0.4053 MPGRRSKSENKDDGEKQLRRDPYEVLGVSRNSTDQEIKSAYRKMALKFHPDKNANDPKAADMFKEATFSYNILSDPDKRRQYDSSGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVSIRPLPLGQFISRRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGLSLALQEDSAKNGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFKKLDGFQPCELTELKAGTHTFAVYGDNFFKSATYTIEVLCAAPFSEEKENLRSVEAQILSKRAEISKFESEYREVLAQFTEMTSRYAHEMQTIDELLKQRNEIHATYTVVPLKRSNSSKGRSKTSSKESSKEDGEAREKRSTRERPRKKKWYNLHLRVDKRKAC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02308 411 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Trre10g02308 411 Coils Coil 298 318 - -
Trre10g02308 411 CDD DnaJ 21 75 IPR001623 -
Trre10g02308 411 FunFam Chaperone protein dnaJ 16 4 103 - -
Trre10g02308 411 MobiDBLite consensus disorder prediction 371 389 - -
Trre10g02308 411 MobiDBLite consensus disorder prediction 1 31 - -
Trre10g02308 411 ProSiteProfiles dnaJ domain profile. 21 86 IPR001623 -
Trre10g02308 411 Gene3D DnaJ domain 5 104 IPR036869 -
Trre10g02308 411 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 6 410 - -
Trre10g02308 411 MobiDBLite consensus disorder prediction 358 399 - -
Trre10g02308 411 SMART dnaj_3 20 78 IPR001623 -
Trre10g02308 411 MobiDBLite consensus disorder prediction 1 23 - -
Trre10g02308 411 SUPERFAMILY Chaperone J-domain 20 90 IPR036869 -
Trre10g02308 411 PRINTS DnaJ domain signature 23 41 IPR001623 -
Trre10g02308 411 PRINTS DnaJ domain signature 78 97 IPR001623 -
Trre10g02308 411 PRINTS DnaJ domain signature 41 56 IPR001623 -
Trre10g02308 411 PRINTS DnaJ domain signature 58 78 IPR001623 -
Trre10g02308 411 Pfam DnaJ domain 21 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02308 Trre-Chr10 27573863 27578479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02308 19 84 C2H2 Transcription Factor Family AT1G74250 43.662 6.74e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02308 - - gmx:100800929 705.286