Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02239 ATGCATTTGATTCACTCTCAAATCACAAACCCTTCAATTATTTCTCCTTATAATTCTAACACCAACCAGAAAAATTCAGAACAAACATCAATTTCTTCATCTTCTAGCAACAAAATAAGCCCTGCAATTCTTTTCATAATAGTTATATTAGCTATAATATTTTTCATCTTAGGTTTACTTCATTTACTTGTTAGATTTCTCATAAAGCAAAGATCTTCATCATCATCATCAACAACAATTTCTCAGTCAAATAGGTTTCAAGAAATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAACTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCTCTTCCTGTTTTTATATACAAAGATATTATTGGTTTGAAAGAACCATTTGATTGTGCTGTTTGTTTATGTGAGTTTTTGGAACAAGATAAGTTAAGGTTGTTACCTAATTGTAACCATGCTTTTCATATTAATTGTATAGATACATGGTTATTGTCAAATTCATCTTGTCCTTTATGTAGGGGTACCCTTTATTCACAAGGGTTTTCTTTTGATAAAAATCATGTTTTTGAGTTTGAGGATCAAAGAAATGAAGATTTGGTTTTAGGTATTGGTTCTGTTAACAAGGATATGGAAAGTCACATTATGAATGGAAAAAGGGTATTTTCTGTTAGGCTTGGAAAGTTTAAAAGCTCAAATAATGTTGAAGGGGTTGAAAAACGTGAAGGAGAGAGTAGTAATTGTAATTTAGATGTTAGGAGATGTTATTCAATGGGATCTTTTCAATATGTTCTTGCTGATTCAGATTTGCAAGTTACTTTGAGAGCTTCTAAAGTTGATAGTATGAGACAATTGAAGGGAATTAGAGAAGTTTGTGATGGGAGTTTTTCCAATGATGGTGATGTTGAAGGTAAAAAAATCAATATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATATGGCAATGGTCTAAGAAAGATAGTAAGATACCAAGTTCATCAGATACACATTTTCATAATTGTGTTGCCACTGAAAATTTTTCTTGGATGAATAAAGCTAGAGGTACATGA 1083 0.3121 MHLIHSQITNPSIISPYNSNTNQKNSEQTSISSSSSNKISPAILFIIVILAIIFFILGLLHLLVRFLIKQRSSSSSSTTISQSNRFQEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKDIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHINCIDTWLLSNSSCPLCRGTLYSQGFSFDKNHVFEFEDQRNEDLVLGIGSVNKDMESHIMNGKRVFSVRLGKFKSSNNVEGVEKREGESSNCNLDVRRCYSMGSFQYVLADSDLQVTLRASKVDSMRQLKGIREVCDGSFSNDGDVEGKKINIARKGESFSVSKIWQWSKKDSKIPSSSDTHFHNCVATENFSWMNKARGT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02239 360 CDD RING-H2_EL5-like 134 177 - -
Trre10g02239 360 SUPERFAMILY RING/U-box 114 183 - -
Trre10g02239 360 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Trre10g02239 360 SMART ring_2 135 176 IPR001841 -
Trre10g02239 360 FunFam RING-H2 finger protein ATL46 97 182 - -
Trre10g02239 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 33 325 - -
Trre10g02239 360 Pfam Ring finger domain 134 177 IPR001841 -
Trre10g02239 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 183 IPR013083 -
Trre10g02239 360 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02239 Trre-Chr10 26436617 26437699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02239 29 338 C3H Transcription Factor Family AT2G18650 43.314 4.86e-62 202