Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02202 ATGATCCGAACAGAAAACGGGTCGGGTCGTCGGATATTGAATTTTCCGGCGGTTCATCCATGCGTAAACATTGCTTCTTCTACCCTTTTATCTTCTCTAATCAATCTCTCTAACGAGATTTCAAAATTTCAACCCAAATTCTTCTCTTCCAACAAACGAAACGCGAAAAACGCTATTCGTTTGATTCATCTTCTTCAACCGTTTCTTCATGAGATCCGAGAGAATCATTCAAATCTTCCGGCTCCGGTGACCCTTTGTTTTACTGAGCTTCATGTCATCTTCCAGAAGCTTTTTTTCTTGATGGAAGATTTGACCCGTGAAGGTGTTCGTTTGTTTATGTTAATGGAGTCGGGTCGGGTTGCAAAGATGTTTCGGGTCTTCTTTAGATCCGTTGCAATTGCACTTGATGCTTTTCCTTTTGATTCTGTTGTTGTGTGTGTGGATGGTAAAGAGGATGTTTTGTTGTTGATGAAGCAAGCTAGGGAGGGAAGGTTTGATTTTGAGGTTGATGATGAAGAGATAGTGATGTGTGTTATGAATGTCTTGAACCTGTTTGAGAAAAGGATTGTTCCAAACAAGTTTGATTTGAAGAAGGTTCTTGATTATATTGGGGTTTGTGAGTGGAGTGAGATTAATAAAGAGGTGAAGTTTTTGGATAGTGAAATTGGGTTTGAGTGGTTGAATGATGAAAAGAGAAAGGTGGGGTTTTTATGTAGTTTGATGGGGTTTATGAGTTATTGTAGATGTGTGGTGGTGGAAGTAATGGATTGTGAAGAAGAGGGAAAAAGTAGTAAGAAAATTTATTCAAGAAGGGAAAGTGAGATGATTTTGAGTTATGTAAACTCGGATGATTTTCGATGTCCGATCTCTTTGGAAACGATGAGTGATCCTGTGACTATAGAAACAGGTCATACTTATGATCGTTCATCGATTCTCAAATGGTTTAGAAGTGGAAATGCAACATGTCCAAAGACAGGTAAAAGTGTTAGTAGCATTGAATTGGTACCTAATTTGGTGCTGAGGAAGTTGATTCAGCAATATTGCAATGTCAATGGAATTCCTAGTGGCGATTCGAGTCGTCGGAGTCGTGACATTACTAGGACGGCGGAGTCGGGAAGCGAGGCGGCAGAGGGAGCAATGAAGCTCTTGGCTGATTTTCTTTGTGAAAGTCTTGACAATGGAAATGTGGAGCAGAAGAACCATGCTGCATTTGAGATCAGGGTTCTCACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGTTGTTGTTGGCATCAAGTGATTCATCAGCACAAGAGAACTCTATTGCAGCCCTTTTGAACCTCTCAAAGTACACCAAAAGTAGAAGTGAAATGGTTGAAAATTGGGGGTTAGAAATGATTGTTGGTGTCTTAAACAAAGGGATAAAGATTGAAGCAAAGCAACATGCTGCAGCAGTGTTGTTTTACCTTGCTTCAAATCCTGATCACGGAAACTTAATAGGTGAAGAGCCAGAAGCAATTCCCTCATTGATCAGTCTCATCAAAGAAGGCACTGATCGAAGCATAAAGAATGGTTTGGTTGCAACTTTTGGCCTCCTTAAGCACCATGAAAATCACAAGAGGATACTTGCTGCTCAAGCAATTCCTTTGTTGGTTATCATCTTGAAAACATGTGATAAAGAAGACCTTGTCACCGACACACTGGCAATTCTCGCAACACTTGCAGAGAAAAGTGACGGAACATCAGAAATCCTTCGTTTCGGAGCTTTGCATGTAGCTGTAGAAGTTATGAGTTCTTCTTCCACAACTTCAAGATTGGGGAAAGAGCATTGTGTGTCATTGTTGCTTTCTCTATCAATAAATGGAGGTGAAAATGTGGTTGCTCATTTAGTGAAGAGTTCTTCACTTATGGAATCATTATATTCACAACTGAGTGAAGGAACTTGTAGAGCAAGCAAGAAAGCAAGTTCTCTCATAAGGGTCCTCCATGATTTTTATGAAAGGAGATCCTCTAACTACAAGGCATCAGTTATTCCACGAGAACAGTTTATTCATGGAGCTGCTCCTGCAGTGTCAGTGGCTTTTGTTGCGTGCAGCAGAATATATCGTTGCCTTCTCAAGATTGATGCTGCAGATTCAGCTGGAAATAAAGTTTATGGTGAATCTTGGAAGAAGGTTTAA 2190 0.4023 MIRTENGSGRRILNFPAVHPCVNIASSTLLSSLINLSNEISKFQPKFFSSNKRNAKNAIRLIHLLQPFLHEIRENHSNLPAPVTLCFTELHVIFQKLFFLMEDLTREGVRLFMLMESGRVAKMFRVFFRSVAIALDAFPFDSVVVCVDGKEDVLLLMKQAREGRFDFEVDDEEIVMCVMNVLNLFEKRIVPNKFDLKKVLDYIGVCEWSEINKEVKFLDSEIGFEWLNDEKRKVGFLCSLMGFMSYCRCVVVEVMDCEEEGKSSKKIYSRRESEMILSYVNSDDFRCPISLETMSDPVTIETGHTYDRSSILKWFRSGNATCPKTGKSVSSIELVPNLVLRKLIQQYCNVNGIPSGDSSRRSRDITRTAESGSEAAEGAMKLLADFLCESLDNGNVEQKNHAAFEIRVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENSIAALLNLSKYTKSRSEMVENWGLEMIVGVLNKGIKIEAKQHAAAVLFYLASNPDHGNLIGEEPEAIPSLISLIKEGTDRSIKNGLVATFGLLKHHENHKRILAAQAIPLLVIILKTCDKEDLVTDTLAILATLAEKSDGTSEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSINGGENVVAHLVKSSSLMESLYSQLSEGTCRASKKASSLIRVLHDFYERRSSNYKASVIPREQFIHGAAPAVSVAFVACSRIYRCLLKIDAADSAGNKVYGESWKKV 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02202 729 SUPERFAMILY RING/U-box 282 353 - -
Trre10g02202 729 Pfam Armadillo/beta-catenin-like repeat 417 452 IPR000225 GO:0005515
Trre10g02202 729 Gene3D - 352 677 IPR011989 -
Trre10g02202 729 PANTHER U BOX DOMAIN-CONTAINING 50 670 - -
Trre10g02202 729 SUPERFAMILY ARM repeat 383 665 IPR016024 -
Trre10g02202 729 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Trre10g02202 729 SMART arm_5 412 453 IPR000225 GO:0005515
Trre10g02202 729 SMART arm_5 538 579 IPR000225 GO:0005515
Trre10g02202 729 SMART arm_5 454 495 IPR000225 GO:0005515
Trre10g02202 729 FunFam RING-type E3 ubiquitin transferase 361 676 - -
Trre10g02202 729 FunFam RING-type E3 ubiquitin transferase 281 353 - -
Trre10g02202 729 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Trre10g02202 729 CDD RING-Ubox_PUB 283 334 IPR045210 -
Trre10g02202 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 351 IPR013083 -
Trre10g02202 729 Pfam U-box domain 283 349 IPR003613 GO:0004842|GO:0016567
Trre10g02202 729 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02202 Trre-Chr10 25832732 25836228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02202 1 688 U-box Gene Family AT1G60190 44.413 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02202 - - gmx:100795816 833.943