Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02156 ATGTCAGTTCCTTCTCATGTCACACCTTTGATGCAAATTGATAACCTTAGGTCAGATTGGTCAATCAAAGTAAGAGTTGTGAGGATTTGGTATGTTCGAAGTATTATCGATCAGAATAAGACCAATGAGATTCAGCTTATTTTAGTTGATCAGGAGGGTTCAAAAATTCAAGCCACTGTACCTGCTCACAGTGTTGATCGTTTGTGCAGCATCTTTTATGAAGGTGGTGTGTATCTTATGTCAAATTTCCAGGTCAAACGTAACGTCGGCAAGTGCATGATTGCTATGAATCAGTTCAAGTTGATTTTCTTCACAACCACTATGGTTATTCCATCACAAAGTTGGGTGATTCCTCAGTATTCTCTGTTGCTATTCTCATCTCAGACGATTAGAAGCTATGAAAAATGCTTGAGTCATTTGATTGATGTCATTGGAATTGTTACTGATATTCATTCAAAACAAACTCATGAAACCAATGCTGTCAAAGTTACGTTAAATGATAAGAGAGGGACATGTGAGTGTATTTTGGTTGGAATGTATGCTGAAAAATTGAAGACAATGATGTCTGGATTGCTCTCTGATCCACCAATTCTTCTGTTACAGTTTGTTCAGATCAAGAACAAAGGAGATTTTGTGTATGTTGAAAGTGTGGAAAACATCACTAGAATTTCCATGAACCCTCCTATTATTGAGGCTGATATGTTTAAGAATGAGATGGGAATTATTGATGCTTCATATCACTTGCGTAACAAAGACTATTACTCAAATTCCAAATCATGCAAGGAGTTAGAGTTCAATGGGTTGTATCCTCACAAGACTCTCTCTGATTTTATACACACCATGGAAGATGGATTGTTTGTTTTATTCTGCAAAGTTGTTGGTATTTTCAAACTTAGTCATTGTTTTTATCCTGTCTGTCATTGCGGTGAGTTCCTCGAGTATGCAAGCGGATCCTATTATTGTGTTTCTTGCCATATGACTGTGTTCAGCACTTCAGCTAGGTGCAATCTTCAAATTGGTGTTCAAGATGTTACATCTGCTGCTCTATTGCCAGTATCCCAAAATCTGCTTCAAGGAATTGGATCAATGGAAAACAATCCATCTTCGCTAACTTTGAGTGTTAATGCTGAATCACCTTTGATTGGTAAAATGTTGCTGTTGATTGCACGAAAAAATAAAAGGGTTGATGATTTATCTGATAATGCAGTCGAAATAATTCGTGTTACGGATGAACTTGATATTGTTAAGGAATATCATGTGAATGGAAATAATTATACTCCTCTCAAGTCTATCTTGGAGACTCCTTTTGGTGAATTAAGTTCGCCAATAAATGTGCCTCCGTCTGTATCTGCTGTTCCCGAGTGTGCTGGTGTTGGAAAGTTTCACCTTGATGGAGATGCTTTCCAGAAAATTCTGGACGATTCTGCTGATCAATACCATAAAAAGTATAAGGAGTTCAAGTTGCGTCATCACGGGGGGCCGTTTGCTAGGATTGGTTTAAATGATGATGCATCTTCTTCAAACATGATTTAA 1533 0.3744 MSVPSHVTPLMQIDNLRSDWSIKVRVVRIWYVRSIIDQNKTNEIQLILVDQEGSKIQATVPAHSVDRLCSIFYEGGVYLMSNFQVKRNVGKCMIAMNQFKLIFFTTTMVIPSQSWVIPQYSLLLFSSQTIRSYEKCLSHLIDVIGIVTDIHSKQTHETNAVKVTLNDKRGTCECILVGMYAEKLKTMMSGLLSDPPILLLQFVQIKNKGDFVYVESVENITRISMNPPIIEADMFKNEMGIIDASYHLRNKDYYSNSKSCKELEFNGLYPHKTLSDFIHTMEDGLFVLFCKVVGIFKLSHCFYPVCHCGEFLEYASGSYYCVSCHMTVFSTSARCNLQIGVQDVTSAALLPVSQNLLQGIGSMENNPSSLTLSVNAESPLIGKMLLLIARKNKRVDDLSDNAVEIIRVTDELDIVKEYHVNGNNYTPLKSILETPFGELSSPINVPPSVSAVPECAGVGKFHLDGDAFQKILDDSADQYHKKYKEFKLRHHGGPFARIGLNDDASSSNMI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02156 510 Gene3D - 117 241 IPR012340 -
Trre10g02156 510 ProSiteProfiles cAMP/cGMP binding motif profile. 436 489 IPR000595 -
Trre10g02156 510 CDD RPA1_DBD_A_like 21 109 - -
Trre10g02156 510 Gene3D - 6 114 IPR012340 -
Trre10g02156 510 Pfam Domain of unknown function DUF223 46 114 IPR003871 -
Trre10g02156 510 Gene3D - 262 358 IPR012340 -
Trre10g02156 510 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Trre10g02156 510 SUPERFAMILY Nucleic acid-binding proteins 130 239 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02156 Trre-Chr10 25028383 25030704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02156 3 345 Core DNA Replication Machinery Family AT5G45400 22.460 2.88e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02156 - - tpra:123905278 381.719