Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02154 ATGAATACTGCGTTTGATATGCTCGGTTCGGTGAGTCCTGGCAGAGAATCTTGGCGATTCAAGGTTCGTGTTCTTAGGTTATGGACTGTGTCTTCTTTTATGAAACCTGATCAAGCTAACTCAATTGAGATGGTTCTTATTGATGAGAAGGGTGCTAAGATCCATGCCTCTGTTCGTCGTCAACTCATGTATGTGTTTGGTTCGAAAATTGCTGAAGGGGAAGTTTATAAGATGTCCTACTTCACTGTTGTTCCAGAATCTGGTGTGTTTCGTTCGACTCAACATCCTTATAAGTTAAAGTTTGAGATGAAGACTAAAGTCCAGATCTGCGAAAATAATTCAATTGATACCTATGGACTATCACTCAGCACTATTGGTGACATATTTGCCTATGGACCTGAACATGATTTTTTAATTGATGTTGCTGCTATCATTACTGGTGTTTCTGGGGAAAGGGAGTATATTCGGGATGGTAGAGTTGTCAAGATGGTTCTACTCGAGCTGTCTGATAATAGTGGAAAGTGTGAATGCGCATTTTTTGGTGATTATGTTGATATTCTTCAAGGGATGCTGGTGAAGGCTGGTGTTGGACTTCCTATAGTTGTGGTTCAATTTGCTAAAATCAAGATGTTTGCAGGAAAAATATCAATTCAAAATGTTATTAATGCTACAAGGATTTTTGTAAATCCTCCAATACCTGAGATTGTCTCTTTGAAAAAAGATTTGGCTGTTGATGGTCTTGAATCTGCTGTCTCTATTCCTGTACTTGGTCCTAGAGTTACTACATCATTTGAGGATGATTTTTTGCTTATGTTTCCTAAGACTACCCTAGCTAAATTGGTTGGACTTGCTGAGGATGGTATTTATGTGGTCAGTGCTTCTGTGGTCGATTTGGTTGATCCTGAGGAGTGGTGGTTTAGGGTGAAACTCAGAGTTGATGATGGAACGGCTGAGGCTGTCTTTGTTGTTTTTGATGGTGATATGCATGCTATGGTTGGCAAGCATTGCTTTGAAATGGTTCTTGATTCTAAGGCTGAAGACGCAGGTTTTTATCCTGCTGAATTTGATTTGCTTAAAGGGAAGAAATTTTTGTTCAAAGTTCAGAAAAGTTATTCAGGAGCTTTAAGGTTTGATGATTCATATAGAGTGAAAAGGATATGCAGCGATGAGGCTATCCTGAAAGCTTTTGAAACTGCTGTGACTGGAAGTGGTTACAATGCTGATGATGAAGGTAGTGGTGAGGAAGTGTCTGTTGAAAATGTTGAGTCTCAGGATGTTGCTGGTGAGGTAGCTGTGACACCAAATTTGGCTACAGGAAATGATGAAGACAGTGATGATGAGGAAATTGTTGTTTCTACCGCTCAGTTTGTCAAGGAAGTGATCGATTTGGGCGATGACTTTAATAAAGATTTGGTTGTGTTTGTTCCTGGGCGTGTTGCTTTGAACCCCATCAAAGTTTTCTCTGCTAAAAGGAATTTGTCTGCTGCCTTTGCTGAGTGTGATGACACTGAAGAAAGCACTTCTCAGATTCCTAAACATGCTCAGGGCTGA 1551 0.4004 MNTAFDMLGSVSPGRESWRFKVRVLRLWTVSSFMKPDQANSIEMVLIDEKGAKIHASVRRQLMYVFGSKIAEGEVYKMSYFTVVPESGVFRSTQHPYKLKFEMKTKVQICENNSIDTYGLSLSTIGDIFAYGPEHDFLIDVAAIITGVSGEREYIRDGRVVKMVLLELSDNSGKCECAFFGDYVDILQGMLVKAGVGLPIVVVQFAKIKMFAGKISIQNVINATRIFVNPPIPEIVSLKKDLAVDGLESAVSIPVLGPRVTTSFEDDFLLMFPKTTLAKLVGLAEDGIYVVSASVVDLVDPEEWWFRVKLRVDDGTAEAVFVVFDGDMHAMVGKHCFEMVLDSKAEDAGFYPAEFDLLKGKKFLFKVQKSYSGALRFDDSYRVKRICSDEAILKAFETAVTGSGYNADDEGSGEEVSVENVESQDVAGEVAVTPNLATGNDEDSDDEEIVVSTAQFVKEVIDLGDDFNKDLVVFVPGRVALNPIKVFSAKRNLSAAFAECDDTEESTSQIPKHAQG 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02154 516 CDD RPA1_DBD_B_like 140 240 - -
Trre10g02154 516 Gene3D - 5 110 IPR012340 -
Trre10g02154 516 Gene3D - 114 249 IPR012340 -
Trre10g02154 516 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Trre10g02154 516 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Trre10g02154 516 Gene3D - 284 389 IPR012340 -
Trre10g02154 516 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Trre10g02154 516 CDD RPA1_DBD_A_like 21 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02154 Trre-Chr10 25020258 25022734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02154 8 240 Core DNA Replication Machinery Family AT5G45400 25.726 1.44e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02154 - - tpra:123893724 573.163