Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02153 ATGAATACTGCGTTTGATATGCTCGGTTCGGTGAGTCCTGGCAGAGAATCTTGGCGATTCAAGGTTCGTGTTCTTAGGTTATGGACTGTGTCTTCTTTTATGAAACCTGATCAAGCTAACTCAATTGAGATGGTTCTTATTGATGAGAAGGGTGCTAAGATCCATGCCTCTGTTCGTCGTCAACTCATGTATGTGTTTGGTTCGAAAATTGCTGAAGGGGAAGTTTATAAGATGTCCTACTTCACTGTTGTTCCAGAATCTGGTGTGTTTCGTTCGACTCAACATCCTTATAAGTTAAAGTTTGAGATGAAGACTAAAGTCCAGATCTGCGAAAATAATTCAATTGATACCTATGGACTATCACTCAGCACTATTGGTGACATATTTGCCTATGGACCTGAACATGATTTTTTAATTGATGTTGCTGCTATCATTACTGGTGTTTCTGGGGAAAGGGAGTATATTCGGGATGGTAGAGTTGTCAAGATGGTTCTACTCGAGCTGTCTGATAATAGTGGAAAGTGTGAATGCGCATTTTTTGGTGATTATGTTGATATTCTTCAAGGGATGCTGGTGAAGGCTGGTGTTGGACTTCCTATAGTTGTGGTTCAATTTGCTAAAATCAAGATGTTTGCAGGAAAAATATCAATTCAAAATGTTATTAATGCTACAAGGATTTTTGTAAATCCTCCAATACCTGAGATTGTCTCTTTGAAAAAAGATTTGGCTGTTGATGGTCTTGAATCTGCTGTCTCTATTCCTGTACTTGGTCCTAGAGTTACTACATCATTTGAGGATGATTTTTTGCTTATGTTTCCTAAGACTACCCTAGCTAAATTGGTTGGACTTGCTGAGGATGGTATTTATGTGGTCAGTGCTTCTGTGGTCGATTTGGTTGATCCTGAGGAGTGGTGGTATCCAGGTTGTAGGTGTCATAGAAGTCTTACTGCTGACTTCGGTGCTTATTATTGCAAGTTTTGTGTGAAGCATCTGTATTTTATATGTATGTTATGTTGTAGGTTTAGGGTGAAACTCAGAGTTGATGATGGAACGGCTGAGGCTGTCTTTGTTGTTTTTGATGGTGATATGCATGCTATGGTTGGCAAGCATTGCTTTGAAATGGTTCTTGATTCTAAGGCTGAAGACGCAGGTTTTTATCCTGCTGAATTTGATTTGCTTAAAGGGAAGAAATTTTTGTTCAAAGTTCAGAAAAGTTATTCAGGAGCTTTAAGGTTTGATGATTCATATAGAGTGAAAAGGATATGCAGCGATGAGGCTATCCTGAAAGCTTTTGAAACTGCTGTGACTGGAAGTGGTTACAATGCTGATGATGAAGGTAGTGGTGAGGAAGTGTCTGTTGAAAATGTTGAGTCTCAGGATGTTGCTGGTGAGGTAGCTGTGACACCAAATTTGGCTACAGGAAATGATGAAGACAGTGATGATGAGGAAATTGTTGTTTCTACCGCTCAGTTTGTCAAGGAAGTGATCGATTTGGGCGATGACTTTAATAAAGATTTGGTTGTGTTTGTTCCTGGGCGTGTTGCTTTGAACCCCATCAAAGTTTTCTCTGCTAAAAGGAATTTGTCTGCTGCCTTTGCTGAGTGTGATGACACTGAAGAAAGCACTTCTCAGATTCCTAAACATGCTCAGGGCTGA 1656 0.3979 MNTAFDMLGSVSPGRESWRFKVRVLRLWTVSSFMKPDQANSIEMVLIDEKGAKIHASVRRQLMYVFGSKIAEGEVYKMSYFTVVPESGVFRSTQHPYKLKFEMKTKVQICENNSIDTYGLSLSTIGDIFAYGPEHDFLIDVAAIITGVSGEREYIRDGRVVKMVLLELSDNSGKCECAFFGDYVDILQGMLVKAGVGLPIVVVQFAKIKMFAGKISIQNVINATRIFVNPPIPEIVSLKKDLAVDGLESAVSIPVLGPRVTTSFEDDFLLMFPKTTLAKLVGLAEDGIYVVSASVVDLVDPEEWWYPGCRCHRSLTADFGAYYCKFCVKHLYFICMLCCRFRVKLRVDDGTAEAVFVVFDGDMHAMVGKHCFEMVLDSKAEDAGFYPAEFDLLKGKKFLFKVQKSYSGALRFDDSYRVKRICSDEAILKAFETAVTGSGYNADDEGSGEEVSVENVESQDVAGEVAVTPNLATGNDEDSDDEEIVVSTAQFVKEVIDLGDDFNKDLVVFVPGRVALNPIKVFSAKRNLSAAFAECDDTEESTSQIPKHAQG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02153 551 SUPERFAMILY Nucleic acid-binding proteins 282 407 IPR012340 -
Trre10g02153 551 Pfam Domain of unknown function DUF223 43 111 IPR003871 -
Trre10g02153 551 CDD RPA1_DBD_B_like 140 240 - -
Trre10g02153 551 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Trre10g02153 551 PANTHER OS03G0429900 PROTEIN 291 408 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g02153 551 Gene3D - 5 110 IPR012340 -
Trre10g02153 551 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Trre10g02153 551 CDD RPA1_DBD_A_like 21 107 - -
Trre10g02153 551 CDD RPA1_DBD_C 282 421 IPR047192 -
Trre10g02153 551 Gene3D - 114 249 IPR012340 -
Trre10g02153 551 Gene3D - 274 424 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02153 Trre-Chr10 25020258 25022734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02153 8 368 Core DNA Replication Machinery Family AT5G08020 21.600 4.09e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02153 - - tpra:123893724 626.32