Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02131 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAAATATGTTATGTACAATGTGGATTCTGTAACACCATTCTAATGGTAAGTGTTCCATGCAGCAGTTTATCAATGGTTGTGACAGTGAGATGTGGTCACTGCACAAGTCTTTTATCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTTCACCTTTTAGCATCTCTTACTCATCTTGAGCAAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGGGTTTGAACAATAATAGTTCATCCATGATGACTTATTCTGATTGTGAGGAAGATGATGTAATTCCAATCACCAATGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGGTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTCAACACCCTGACATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTGCCCCCCAATTCAGTTCAAAGGAGATGAAGAAAGCTGTAACCAGACAGATCAACTAGTGGATCTTGACTCCCAAGTGGACCCTCATGATGCTGAGGTGAATGAAGAAGAAAATGGATTCCGTGGAAGAAAGGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 651 0.3932 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQKESSSPDEDANKGLNNNSSSMMTYSDCEEDDVIPITNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAQHPDMAHKEAFSTAAKNWANCPPIQFKGDEESCNQTDQLVDLDSQVDPHDAEVNEEENGFRGRKVPRNSILERTPFE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02131 216 PANTHER PROTEIN YABBY 6-RELATED 2 176 IPR006780 GO:0007275
Trre10g02131 216 FunFam Axial regulator YABBY 4 108 175 - -
Trre10g02131 216 MobiDBLite consensus disorder prediction 188 209 - -
Trre10g02131 216 Pfam YABBY protein 11 166 IPR006780 GO:0007275
Trre10g02131 216 MobiDBLite consensus disorder prediction 188 216 - -
Trre10g02131 216 MobiDBLite consensus disorder prediction 73 96 - -
Trre10g02131 216 CDD HMG-box_SF 121 162 - -
Trre10g02131 216 Gene3D High mobility group box domain 109 194 IPR036910 -
Trre10g02131 216 SUPERFAMILY HMG-box 109 162 IPR036910 -
Trre10g02131 216 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02131 Trre-Chr10 22322543 22325149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02131 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 57.709 1.71e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre10g02131 YABBY 4.1e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02131 K25796 - gmx:100804172 360.533