Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02114 ATGGGAAAGATGTTTGATATGCTTGCCACTGTCAATCCTGATAAAGATTCATGGTGTTTTAATGTTCGTGTTATACGCTTGTGGACTGTGTACTCAACAACAGAACCTGGCCACTTGAACTCCCTCGAGATGATCATAATTGATGAAACGGGTACTAAGATTCACGCATCTATTGATCACAAGTTGCTCTATTTATTTCGTCACAAAATATTTGAAGGGAGTGTGTATAATATGTCAAATTTTAAAGTTGCACTAGAAGAAGAAAAACTTGGATTGTCACTAACTACAATTGGAAATATTCGTGGTTATGGTCCTGATCATGAATTTTTAGTTGATGTTGCTGGATTGGTTATGCGCACCTCATCGGAGAGGGAATGTATTCGCAATGGAAAAAGTACCAAAGAGGTTGTGCTTCAGATGTTTGATAATAGTGGTAATTGTGAATGTGTATTGTCTGGGATTTATGTTGATGAGTTTCAACGCTTGGTTGATAGAGGTGGTGGCGGCCTTCCTATTATAGTCATTCAATTTGCAAAAATTCGATATGAACAAGGGAAAATGTCCATTGAAAATTACTTGAATGTCACTAGGATTTTGATCAATCCTATTATACCAGAAATCATTGCTTTCAAAGAAAGTCTTGCAATTGTTGGTGTTGTTTGTGTTGGGCCTAACACAAGACCATCTCTTGACGAAGATTTCTTAACGAGGAATCCACCTATTTCAATAGCTAACTTGCGTAAAACAAAGAAAGAAGGATTTTATATTGTTGGGGGTATAATTGACTCCTTGGTGGAGCCTGAACAATGGTGGTATCCTGCTTGTTCTTGCCATGCAAGTCTATCTCCTAATGCTAACGGATTTTATTGCAATGATTGTGACAAAGATGTCCCCCATATGATTCCAATGTTTAAATTAAAGCTAAGAATTAGAGACGGAACTGGACAAGAGATTTTCGTTCTTTTTGAACAAGAAATGTATGAATTATTAGGAAAACATTGCCACGAATTGCTTACAGTGCAGGAGGGAGACAATTCTCATTGCTACCCCTTGGAGTTGGATATTCTCAAAGGTAGAAAATTATTATTGAAAATTGAGAAAAGTAATATCAATGGCTATGATATTTCTGAAAAGCCTTTTAGAGTTGAGCGAATATGCAAAGATTTATCTCTTATTGGTGCCTTCGATTCGCCTTTCCTCAATGAAGCAAGTGATTCTGAAGACGACGAATGA 1233 0.3682 MGKMFDMLATVNPDKDSWCFNVRVIRLWTVYSTTEPGHLNSLEMIIIDETGTKIHASIDHKLLYLFRHKIFEGSVYNMSNFKVALEEEKLGLSLTTIGNIRGYGPDHEFLVDVAGLVMRTSSERECIRNGKSTKEVVLQMFDNSGNCECVLSGIYVDEFQRLVDRGGGGLPIIVIQFAKIRYEQGKMSIENYLNVTRILINPIIPEIIAFKESLAIVGVVCVGPNTRPSLDEDFLTRNPPISIANLRKTKKEGFYIVGGIIDSLVEPEQWWYPACSCHASLSPNANGFYCNDCDKDVPHMIPMFKLKLRIRDGTGQEIFVLFEQEMYELLGKHCHELLTVQEGDNSHCYPLELDILKGRKLLLKIEKSNINGYDISEKPFRVERICKDLSLIGAFDSPFLNEASDSEDDE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02114 410 CDD RPA1_DBD_C 245 385 IPR047192 -
Trre10g02114 410 Gene3D - 5 94 IPR012340 -
Trre10g02114 410 SUPERFAMILY Nucleic acid-binding proteins 8 87 IPR012340 -
Trre10g02114 410 SUPERFAMILY Nucleic acid-binding proteins 92 216 IPR012340 -
Trre10g02114 410 Pfam Replication factor-A C terminal domain 257 347 IPR013955 -
Trre10g02114 410 PANTHER OS03G0429900 PROTEIN 7 213 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre10g02114 410 CDD RPA1_DBD_A_like 22 84 - -
Trre10g02114 410 Gene3D - 95 218 IPR012340 -
Trre10g02114 410 Gene3D - 236 389 IPR012340 -
Trre10g02114 410 CDD RPA1_DBD_B_like 112 214 - -
Trre10g02114 410 SUPERFAMILY Nucleic acid-binding proteins 246 365 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02114 Trre-Chr10 21738086 21740098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02114 1 344 Core DNA Replication Machinery Family AT5G08020 21.898 1.50e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02114 - - tpra:123893724 376.711