Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02110 ATGTCCACTTCATCCACAACCCGAATTCCTATGTTCGGATCCGACGATATCTTCACCGCCGCAGCAGAACCTTCTTCAGCCGCAATTCACGATGACGTGGCAACATCTAGTGTTATGAAATCCAAAATCGCTTCTCATCCTTACTACCCTCGCCTCCTTCAAGCTTACATCGATTGTCAAAAGGTCGGTGCTCCTCCTGAAATCGCGCGTTTGTTAGAAGAAATTCGTCAAGAAAATGATCAACTTAAAAGAGACGTAGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGATGAATTTATGGAAACTTACTGTGATATGCTTGTGAAGTATAAATCAGACCTTACTCGTCCCTTTGATGAAGCTACAACGTTTCTAAACAAGATCGAAACTCAACTTAGCCATCTCTGCACCGGTGCTTCAGTTCCAAATGCTTCTGGTCCCTCTCTAGCCTCTTTGGAAAAGAAAGCTATCTTATTCTTCTGTGCATAG 495 0.4384 MSTSSTTRIPMFGSDDIFTAAAEPSSAAIHDDVATSSVMKSKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIRQENDQLKRDVVVSTCFGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLSHLCTGASVPNASGPSLASLEKKAILFFCA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02110 164 Pfam KNOX2 domain 92 138 IPR005541 GO:0003677|GO:0005634
Trre10g02110 164 SMART KNOX1_2 37 81 IPR005540 GO:0003677|GO:0005634
Trre10g02110 164 SMART KNOX2_2 88 139 IPR005541 GO:0003677|GO:0005634
Trre10g02110 164 Pfam KNOX1 domain 39 80 IPR005540 GO:0003677|GO:0005634
Trre10g02110 164 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 23 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02110 Trre-Chr10 21617572 21627654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02110 2 150 Homeobox Transcription Factor Family AT1G23380 61.491 3.77e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02110 - - lja:Lj2g3v1415210.1 226.868