Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02079 ATGGCTTCTTTAATTCATCAACTTCTTTCACTTTTTCTTCTTTTTCTACCATTTTTATTTACAAGTGTTTCTTCCATTGAAGTTTCAATCAAAAAATCTTACATGGAATCTTTTAAATGTTCCACAAAGATCAAAACATGCAATGCATCACTCTACCACATAAACTACAATCACAACATAGAACAAATAGCAAATTTTTATTCTGTTGATTCTTCTAAAATCAAACCGATTATCCGTAGCACGAAACAAGATTACCTTATAAAAGTACCTTGTTCTTGCAAAAACACCAATGAGCTTAGTGGTTATTTCTACGATACAATCTATACCGCGCGGCCTAATGAAAGTTTTGTCGATGTTAAGAATCTTGTTTATAGCGGTCAAACATGGCAAGACGACATAAATTTAGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCGGAATTTGAGTCGGAAATTGTTGTTACATATACTGTTCAGCAAAATGATACCCCAACATCAATTTCTCTTTTGCTTAATGCTACTGTTAATGGCATTGTTAGAATGAACCAAATTTTGGTTGCTAACCCTTCATTCATAGATATTGGTTGGGTGTTATATGTTCCGGAGGAATTAAAATGGTCCTCACATTCCAATAGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCCTATTGAGTGTGACATTACTTTCAGTTATTACTGTGATTGTTCTAATTCTTAGGAGAAATAAAGCTTATCCAACCAGCAAAACTGATCCAAAAACTTTCTCTAAAAGATCATTAGCCAATAGAACTATTTCCTTAAGGAATCATGAATTTCATAAAGAATATATGGAAGATGCAACACAATTTGAGTCAGAAAGACCAGTGATTTATGATTTTGAGGAGATTGAAATTGCTACAAATAACTTTGATGAAACTAGAAGAATTGGAGTTGGTGGATATGGTACTGTCTATTTTGGAATGCTAGAAGATAAAGAGGTTGCTGTGAAGAAAATGAAGTCTACCAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCACATTAACATTGTGGAATTGTTAGGATATGCAAGTGGAGATGATCACCTTTATTTGGTTTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCTCTATTGAAAGGTCACCAACCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCGGCGAAAGGTATCGAATACATACATGATTACACGAAATCGCGATATGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGTTAAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGTTAGTAGAAAGAACCAATGATGAAGAATTCTTAGCTACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAACTTCAAGTGACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTTTGTCTGAGTTGATAACAGGGAAACGTGCATTATTTCGTGACAACAAAGAAGCCAATAATATGAAATCACTTATTGCAATTGTTAACAAAATATTTCAAGATGATGATCCAGTGACTGCTTTAGAAGCTGTTGTAGATGGAAACCTTCAACGTAATTATCCTATTGTAGATGTCTACAAGATGGCAGAAGTATCACATTGGTGCTTGAGTGAAAATCCAGTGGACAGGCCAGAAATGAAAGAAACAGTTATAGTATTGTCAAAGATTGTAATGTCTTCAATAGAATGGGAAGCATCACTAGGTGGGGACAGCCAAGTTTTCAGCGGTGTATTTGATGGAAGATAA 1845 0.3491 MASLIHQLLSLFLLFLPFLFTSVSSIEVSIKKSYMESFKCSTKIKTCNASLYHINYNHNIEQIANFYSVDSSKIKPIIRSTKQDYLIKVPCSCKNTNELSGYFYDTIYTARPNESFVDVKNLVYSGQTWQDDINLVANENVTIHIPCGCSEFESEIVVTYTVQQNDTPTSISLLLNATVNGIVRMNQILVANPSFIDIGWVLYVPEELKWSSHSNRKEKKHKWVIIIGILLSVTLLSVITVIVLILRRNKAYPTSKTDPKTFSKRSLANRTISLRNHEFHKEYMEDATQFESERPVIYDFEEIEIATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSTKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKSRYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNKEANNMKSLIAIVNKIFQDDDPVTALEAVVDGNLQRNYPIVDVYKMAEVSHWCLSENPVDRPEMKETVIVLSKIVMSSIEWEASLGGDSQVFSGVFDGR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02079 614 FunFam Kinase family protein 286 381 - -
Trre10g02079 614 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 31 610 IPR044812 GO:0019199|GO:0045087
Trre10g02079 614 SUPERFAMILY LysM domain 158 205 IPR036779 -
Trre10g02079 614 Gene3D LysM domain 154 218 IPR036779 -
Trre10g02079 614 Gene3D Phosphorylase Kinase; domain 1 288 381 - -
Trre10g02079 614 ProSiteProfiles LysM domain profile. 158 204 IPR018392 -
Trre10g02079 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Trre10g02079 614 Gene3D Transferase(Phosphotransferase) domain 1 382 599 - -
Trre10g02079 614 Pfam Protein kinase domain 311 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02079 614 ProSiteProfiles Protein kinase domain profile. 310 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g02079 614 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Trre10g02079 614 SUPERFAMILY Protein kinase-like (PK-like) 294 584 IPR011009 -
Trre10g02079 614 SMART LysM_2 159 205 IPR018392 -
Trre10g02079 614 FunFam PTI1-like tyrosine-protein kinase 3 382 600 - -
Trre10g02079 614 CDD LysM 158 204 IPR018392 -
Trre10g02079 614 SMART serkin_6 310 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02079 Trre-Chr10 20913387 20917197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02079 290 614 Receptor kinase-like Gene Family AT1G51940 52.266 6.51e-117 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre10g02079 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02079 - - gmx:100800907 877.47