Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02078 ATGAATCCAAATGCAGTTGCTAACCTCCTTCGTCTTCAATTTCATGACTGCTTCGTTGTTGGATGTGATGCATCAATCTTGCTAGACTACTCACCAACAGGAGAACAAGTAGAAAAAAGTTCATTTTTCAATGGTCAACTTCTCAAAGGAGCTGATATAGTTGATGATATAAAATCAAAGCTAGAAGAACAATGTCCAGGAGTAGTATCATGCTCGGACACATTAGCATTCGCAATCAATGAAGGAATGGTCCTTGCAGGTTTACCTCGTAGAGCACCTCTTGGCGGTCGTAGAGATTCCGTCTATTCCCTCGCATCTGTCGTGGAAGATAACAACCTTCCAATGCCTGGTTGGTCGATCGAAAGAATGATTGAGCTCTTTACGAGAAAAGGGTTCACAATTGAAGAAATGGTTATTTTAATTGGTGCACATTCAATTGGTTCAGTTCATTGTGATATTTTTATGGAAAGGATTTACAATTTCGCAAATACAAGAAAACCTGACCCTACACTACCGGCTCCAGTAATTAATGAGTTTCAACAAATATGTAAGAATGCTGGGACACCTCAATTTAGAAACCCACCAGTGAATTTCGATGAGACACCGACGGTGCTTGATACCTTGTTTTTCAAGAATATGGTGAATAGAAACAAGACAACTATACTTACAGATTCTCATTTGATCAATGATCCTAGAACAATTCCTATTGTTCAACAGATGGCCAATGAGGATGGTTTGTGGCAACAAAGGTTTCCTGAGGTTATGGATAAAATGAGTTCTTTGAATGTTCTTACCGGAAATAATGGTGAAGTGAGGAAGACTTGTAGGTCCACTAATTAA 840 0.3893 MNPNAVANLLRLQFHDCFVVGCDASILLDYSPTGEQVEKSSFFNGQLLKGADIVDDIKSKLEEQCPGVVSCSDTLAFAINEGMVLAGLPRRAPLGGRRDSVYSLASVVEDNNLPMPGWSIERMIELFTRKGFTIEEMVILIGAHSIGSVHCDIFMERIYNFANTRKPDPTLPAPVINEFQQICKNAGTPQFRNPPVNFDETPTVLDTLFFKNMVNRNKTTILTDSHLINDPRTIPIVQQMANEDGLWQQRFPEVMDKMSSLNVLTGNNGEVRKTCRSTN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02078 279 PANTHER PEROXIDASE 25-RELATED 2 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 ProSitePatterns Peroxidases active site signature. 6 17 IPR019794 GO:0004601
Trre10g02078 279 Pfam Peroxidase 3 242 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 FunFam Peroxidase 114 258 - -
Trre10g02078 279 Gene3D - 2 279 - -
Trre10g02078 279 CDD secretory_peroxidase 2 278 IPR033905 GO:0004601|GO:0042744
Trre10g02078 279 PRINTS Plant peroxidase signature 135 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Plant peroxidase signature 8 28 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Plant peroxidase signature 49 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Plant peroxidase signature 87 102 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Plant peroxidase signature 68 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Plant peroxidase signature 213 230 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Plant peroxidase signature 253 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 Gene3D Peroxidase, domain 2 114 258 - -
Trre10g02078 279 ProSiteProfiles Plant heme peroxidase family profile. 1 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 SUPERFAMILY Heme-dependent peroxidases 3 279 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Haem peroxidase superfamily signature 136 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Haem peroxidase superfamily signature 69 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Haem peroxidase superfamily signature 87 99 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 PRINTS Haem peroxidase superfamily signature 6 20 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre10g02078 279 ProSitePatterns Peroxidases proximal heme-ligand signature. 136 146 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02078 Trre-Chr10 20910446 20911517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02078 2 279 Peroxidase AT4G08770 39.223 3.66e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02078 K00430 - gmx:100802856 391.734