Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02058 ATGACAAGAAAAAAGGTGAAACTTGCTTTCATTGTTAATGATGCTGCTAGAAAAGCATCATATAACAAAAGGAAAACGAATCTATTGAAGAAGGTTGATGAAATAAGCATTCTGTGCGGAATTGAAGCATGTGCCATAGTATGTGGTCCTTTTGAGCCACAACCTGATATTTGGCCATCTCCTTTGGGAGTCCAAAATGTGCTCTCAAAATTCAGATCATTGACTGAATTTGAGCAGAATAGGAACAAATTGAATCAAGAGGATTTTTTGAAACAAAGAGTTTTTAAGGCTCAACAACAACTTATGAAACTGAGGAGAGAAAATATGGAGAACGAGATGAGAGTTCTCATGTATGAATCTATTGGACATAATAGAATTATACGCGAAACTATGTCAATAGATGAATCAAATGTTCTTTGTCGGTTGATTGATCAAAATTTAAAGGACATATGTAGAAGATTGGAAGTTGGCAATAATAATATTGGGCAAAGTGAAATCATGTCTGCTCCAACTATAGGCCAACTTCAAATGGCACCACCACCGCCAGAGGCACCAACAACAACATCGAGCAATCAAGAACTAACTATGAGGGCGGATCATGGTCATACTGGGACGACTATGAATGATGCTGACATCATGCAAAGGCAGTTGGATATGGACTTGATGCTGAATGGAAATGGGGATGAGACAATTTCATTTGGTCATCTTCATGATGCAAATTTTCAAAATGGATTTTGGCCTAATATGCTTCCTTAA 756 0.373 MTRKKVKLAFIVNDAARKASYNKRKTNLLKKVDEISILCGIEACAIVCGPFEPQPDIWPSPLGVQNVLSKFRSLTEFEQNRNKLNQEDFLKQRVFKAQQQLMKLRRENMENEMRVLMYESIGHNRIIRETMSIDESNVLCRLIDQNLKDICRRLEVGNNNIGQSEIMSAPTIGQLQMAPPPPEAPTTTSSNQELTMRADHGHTGTTMNDADIMQRQLDMDLMLNGNGDETISFGHLHDANFQNGFWPNMLP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02058 251 Coils Coil 87 107 - -
Trre10g02058 251 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre10g02058 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre10g02058 251 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Trre10g02058 251 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Trre10g02058 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre10g02058 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre10g02058 251 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Trre10g02058 251 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre10g02058 251 PANTHER MADS BOX PROTEIN 3 117 - -
Trre10g02058 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02058 Trre-Chr10 20642301 20643056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02058 1 188 Type I MADS-box Gene Family AT5G48670 44.845 2.13e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre10g02058 SRF-TF 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02058 - - mtr:11434260 233.417