Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02052 ATGGAGCATGCCGGAGCAAATGGAGTACAACACTTGGATATATCGTTTTTTGACGATGAAACAGTAGGTGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATCGGAAATGATCTTAATTTGATACTGCGCAATGTCCTTCAGGTAGCTCAAGAGACATACTCTCTTATTAGAACTGTTCGAGTTTATGGAACCGAAGAAGAAGAACACGGAAGGTACAAATGGTGGCTGGAAAAATTAGCTGACATAAGTTTACGACAAAGCGCTGCATATGGATTTTGGAATTTTAGCTTCAACACTCTTTATCATTCAACTCAGATTATTGCCGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCAAATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTAGGAGACAACATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAAAAAGTGTTCAACTTAATGGATCTCTCACCTAGCAGCCAATTCATAACAAGAGGAATAAAGTTGCAAAGTTTAATGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGAAACATGTAAACTTTGTTGTCAATCCTGGTGAGGTGGTTGCCATTGTTGGTCTTAGTGGTAGCGGAAAAAGCACACTGGTGAATCTTTTGCTTCGTCTCTATGAGCCTACAAGTGGTCAGGGAATTTGGTGTGGAATGATGTCAGGGACTATATTGCAAACATGTGTTCTTTTGCTAATGGTTTACAAAACTAACTGGAACAAAGAGGCCTCTCTTGCTGAAGATAGGATAAGGAATTGGGGTGGGGGTCAACAAGTGACTGAAACCAACATAGTAGAGACATGA 915 0.4 MEHAGANGVQHLDISFFDDETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQVAQETYSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLYHSTQIIAVLFGGMSILAGQITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITRGIKLQSLMGHLEFVNVSFHYPSRPTVSVVKHVNFVVNPGEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQGIWCGMMSGTILQTCVLLLMVYKTNWNKEASLAEDRIRNWGGGQQVTETNIVET 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02052 304 SUPERFAMILY ABC transporter transmembrane region 8 172 IPR036640 GO:0005524|GO:0016020
Trre10g02052 304 Gene3D - 177 292 IPR027417 -
Trre10g02052 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 263 IPR027417 -
Trre10g02052 304 Gene3D ABC transporter type 1, transmembrane domain 6 52 IPR036640 GO:0005524|GO:0016020
Trre10g02052 304 Gene3D ABC transporter type 1, transmembrane domain 53 176 IPR036640 GO:0005524|GO:0016020
Trre10g02052 304 Pfam ABC transporter transmembrane region 51 143 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g02052 304 PANTHER ABC TRANSPORTER B FAMILY 10 54 IPR039421 -
Trre10g02052 304 Pfam ABC transporter 211 250 IPR003439 GO:0005524
Trre10g02052 304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 9 48 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g02052 304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02052 Trre-Chr10 20323724 20330576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02052 166 255 Calmodulin-binding Proteins AT2G36910 41.758 2.62e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02052 - - gmx:100813359 410.223