Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02049 ATGCGTTCTCTACTCACAGGCACACACCATTACTTACTTCCACCTCAAACCCTTCATCACCGCCATAACCACCATATCAAACCTCTAATCACATCCTCTTCCAACCACCACCGTTTCCATTTCACCCCAAACCGAATCGCTCTCACTTCTTCCAAACGCATTCTCTTTTCTCATCCTATAAAATCAGCATCCATCAATGAAGTCTCCGTTCACAACAATCCAGAAGCTTCCAACGAGTTTCTCAGCAAAATACGAAAATGGGTTTCTTTCATTCCTTCAATTTTCCCCGGTGGAACCTGGTGGAACTTCTCCGATGACGATAATGTTCAATTATACGGTCAACCAGTTACAGTTTGGTACGCTTTGGGTAAAATGTGGAATCTTGTTGCAAAAGATAGATGGGTTATTTTCGCTGCTTTCTCTGCTCTTATTATTGCAGCAGTTTCGGAGATTTCTATACCACATTTTTTGACGGCTTCTATATTCTCAGCACAGGGTGGGGATATTGCTGTTTTTCATGGGAATGTGCGTTTGTTGATTCTATTGTGTGTTACTTCTGGAATTTGCAGTGGGATACGAGGTTGCTTTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCGTTTTTTGACGATGAAACAGTAGGTGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATCGGAAATGATCTTAATTTGATACTGCGTAATGTCCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATATACATTGGTGATATGCTCTATATTAGCAGCGGTCATGCTACGTTATGGATGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCAGCTAATAATGTAGCTCAAGAGACATACTCTCTTATTAGAACTGTTCGAGTTTATGGAACCGAAGAAGAAGAACACGGAAGGTACAAGTGGTGGCTAGAAAAATTAGCTGACATAAGCTTACGACAAAGCGCTGCATATGGATTTTGGAATTTTAGCTTCAACACTCTTTATCATTCAACTCAGGTTATTGCCGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCAGATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTAGGAGACAACATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAAAAAGTGTTCAACTTAATGGATCTCTCACCTAGCAGCCAATTCATAACAAGAGGAATAAAGTTGCAAAGTTTAATGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGAAACATGTAAACTTTGTTGTCAATCCTGGTGAGGTGGTTGCCATTGTTGGTCTTAGTGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTATAAGTGGTCAGATTTTGGTAGATGGTGTCCCTCACAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCGAAGCTATTTCGGATGGATATTCGCTCGAACATCAAATATGGATGTACACGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGACACAGGCCTATGCTCATGACTTTATATCAGCACTTCCTAATGGTTATGAAACAATTGTTGATGACGATCTTTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTCGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCCGAAAGTGAACATAATGTTAAGGGTGTTCTTCGATCGGTTAGAAGTGATTCTTCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTCTCTACCATACAAGCTGCGGACAGGATTATTGTGATGGATAGGGGTCATATTGTTGAGGATGGAAGTCACAGGGAACTTCTCTTGAAAGACGGTTTATATGCTCGGTTGACTAGAAAACAAGCTGATTCTATGGAATGA 2094 0.4131 MRSLLTGTHHYLLPPQTLHHRHNHHIKPLITSSSNHHRFHFTPNRIALTSSKRILFSHPIKSASINEVSVHNNPEASNEFLSKIRKWVSFIPSIFPGGTWWNFSDDDNVQLYGQPVTVWYALGKMWNLVAKDRWVIFAAFSALIIAAVSEISIPHFLTASIFSAQGGDIAVFHGNVRLLILLCVTSGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDDETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGLYTLVICSILAAVMLRYGWYQKKAARLIQEVTASANNVAQETYSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLYHSTQVIAVLFGGMSILAGQITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITRGIKLQSLMGHLEFVNVSFHYPSRPTVSVVKHVNFVVNPGEVVAIVGLSGSGKSTLVNLLLRLYEPISGQILVDGVPHKDLDVMWWRERIGYVGQEPKLFRMDIRSNIKYGCTRDVKQEDIEWAATQAYAHDFISALPNGYETIVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSSSRRSVIVIAHRLSTIQAADRIIVMDRGHIVEDGSHRELLLKDGLYARLTRKQADSME 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02049 697 Gene3D - 442 697 IPR027417 -
Trre10g02049 697 Pfam ABC transporter transmembrane region 139 403 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre10g02049 697 Gene3D ABC transporter type 1, transmembrane domain 120 437 IPR036640 GO:0005524|GO:0016020
Trre10g02049 697 SMART AAA_5 479 668 IPR003593 GO:0016887
Trre10g02049 697 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 452 691 IPR003439 GO:0005524
Trre10g02049 697 CDD ABC_6TM_TAP 139 426 - -
Trre10g02049 697 Pfam ABC transporter 471 618 IPR003439 GO:0005524
Trre10g02049 697 SUPERFAMILY ABC transporter transmembrane region 124 432 IPR036640 GO:0005524|GO:0016020
Trre10g02049 697 PANTHER ABC TRANSPORTER B FAMILY 131 689 IPR039421 -
Trre10g02049 697 FunFam Multidrug ABC transporter ATP-binding protein 444 696 - -
Trre10g02049 697 FunFam ABC transporter B family member 26, chloroplastic 118 437 - -
Trre10g02049 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 692 IPR027417 -
Trre10g02049 697 ProSitePatterns ABC transporters family signature. 590 604 IPR017871 GO:0005524|GO:0016887
Trre10g02049 697 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 418 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02049 Trre-Chr10 20270676 20277098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02049 207 697 Calmodulin-binding Proteins AT2G36910 34.200 1.42e-69 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02049 - - gmx:100813359 1083.94