Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02043 ATGGCTTCCGAATCCTCTAGCATCTCTGCCACATCACAAGATCAAGAGGATTCCAACTCAAAAAAAGTGGCGGTCACGAAGGAGATCGAGCAAGATCAATCATCAAACTCAAATTCAAAAAACCCTGTTGATTTCGTGAAGCTATCGAAAGACGATCCAGTTCCTATGTCGAATGTGCAAGAGCACAATTTCTTTAGTCCTATTCAAGTCGGTTCGTCATCTCGTTTTCCTATTAGCAACAATGAAACGAAAGATGAGAACGAGAATGAAGAGAAAAATTCGGATTCAAGGTCTTTTTCATGCTCCTTTTGCAAGAGACAATTTTCTACTTCACAAGCGTTAGGAGGGCACCAAAACGCTCATAAGGCGGAACGTGCCTTAGAAAAGCAACGTAAACAAAGGGCACTTGGGACTAGAATGGAGTCCATGATTCAAAAACCACGGTTTACTCCACATAGTATTGGGTATAGTCATGGTGCTTTGTGTTTGCAAGAGATATTAAACCCTTCTCTTGTGTCATTGAGAAATATGGGGGGTGGTAATAGCGGGATTGGAAATCTAAGCATTGGTGGTGCAACTACTTTAAAGATTGAAGATGGTTCAAAAAATAAATTAAAAATTGAAGATGGTTCAAAAAATAATAGTGATATCCTAAAGTTTGGAGAGTCTTCTACAAATATTGCTACAAGTTCAAACTCAAACATAGAGAAGAAAAATATTGCGGGTCTTACTTCTACTAAGGATGATATTCTTCAATCAAAGTCCAATATTGAGGAAGAAACCTCCAATAATTCTGATGAATCATCTGGACTTGATTTGTCACTTAAGCTTTAA 834 0.3801 MASESSSISATSQDQEDSNSKKVAVTKEIEQDQSSNSNSKNPVDFVKLSKDDPVPMSNVQEHNFFSPIQVGSSSRFPISNNETKDENENEEKNSDSRSFSCSFCKRQFSTSQALGGHQNAHKAERALEKQRKQRALGTRMESMIQKPRFTPHSIGYSHGALCLQEILNPSLVSLRNMGGGNSGIGNLSIGGATTLKIEDGSKNKLKIEDGSKNNSDILKFGESSTNIATSSNSNIEKKNIAGLTSTKDDILQSKSNIEEETSNNSDESSGLDLSLKL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02043 277 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Trre10g02043 277 Pfam C2H2-type zinc finger 99 123 - -
Trre10g02043 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Trre10g02043 277 MobiDBLite consensus disorder prediction 249 277 - -
Trre10g02043 277 MobiDBLite consensus disorder prediction 81 95 - -
Trre10g02043 277 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 132 IPR044246 GO:0009788
Trre10g02043 277 MobiDBLite consensus disorder prediction 1 19 - -
Trre10g02043 277 MobiDBLite consensus disorder prediction 29 44 - -
Trre10g02043 277 MobiDBLite consensus disorder prediction 59 80 - -
Trre10g02043 277 MobiDBLite consensus disorder prediction 249 271 - -
Trre10g02043 277 MobiDBLite consensus disorder prediction 1 97 - -
Trre10g02043 277 Gene3D Classic Zinc Finger 79 150 - -
Trre10g02043 277 SUPERFAMILY beta-beta-alpha zinc fingers 96 127 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02043 Trre-Chr10 20237896 20238819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02043 87 133 C2H2 Transcription Factor Family AT5G01860 62.500 2.58e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02043 - - tpra:123915384 419.853