Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02042 ATGGGAAAGAAGGGATGGTTTAACATTGTAAAGAAGATCTTTACAAGGGAGACACATTCCACACAAGAGAAGAAGGAGAAAAGAAGAAAGTGGGTATTTGGGAGGCTAAAAAACAAGAGATTTCCGTCAATTGAAGCACCACCAACATTCAAAGGAACAAATTTATGTGAATCTGAAGAAGAACACAGTAAGCATGCTTTATCAGTTGCAACGGCTGCAGCTGAAGCTGCTCTTACTGCTGCTCAGGTTGCAGTTGAGGTTGTTAGGCTCCAATCTGCTCATCAATTTAAGCGAAAACCAGAACAAGTTAAAACCAACTGCGAGTGGAAGATTGAAGAATCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTTGCACGGAAAGCTTTGAGGGCATTGAAGGGAATAGTGATGCTTCAATCTATCATTCGTGGTAGAGCTGTAAGACGGCAAGCTATGAGTACTCTTAAATGCTTGCAGTCCATTGTGAGTATCCAGTCTCAGGTCATTGCAAAGAAACTCCAAATGGTTGAAGGAAGGTTTGATTATGGTGAATATGAAGAGATGCAAGATTCAAGAGACAAGATCATAAGGATGGACTCAAACAGTGATAGAAAGAATGAAAGAGTAAAAGAATACTCATATCACCATAGAATATCAACTGAATCGGAAAGAAACAAAATAAATGGAAGAGGGAGGTATTGGATGGACACACAGCATTGTAAGAGTAAAGAACTAGAAGATCTAGACTCGGTTTTCAGCTCACTTTGTAGAGTTGTGGAAGATTGTGAAAGTAGACAACAAAAGCTTAGACATATTCAGACACAGAATGAAGTTGAATGGTTAGATTCTCGGCCGATACTATCTTCAAGAAACTCTTCGCCCCAAATGAGCCATAATTTAGATGGAGAATATCACTCATTTCCGAGCTCTCCTGCAATTCCGACATATATGGTTGCAACAAAATCAACACAAGCAAAAGTAAGATCAACAAGCACACCAAAAACAAGGATAGTAAGGAATTAG 1032 0.3915 MGKKGWFNIVKKIFTRETHSTQEKKEKRRKWVFGRLKNKRFPSIEAPPTFKGTNLCESEEEHSKHALSVATAAAEAALTAAQVAVEVVRLQSAHQFKRKPEQVKTNCEWKIEESSAIKIQTAFRGYLARKALRALKGIVMLQSIIRGRAVRRQAMSTLKCLQSIVSIQSQVIAKKLQMVEGRFDYGEYEEMQDSRDKIIRMDSNSDRKNERVKEYSYHHRISTESERNKINGRGRYWMDTQHCKSKELEDLDSVFSSLCRVVEDCESRQQKLRHIQTQNEVEWLDSRPILSSRNSSPQMSHNLDGEYHSFPSSPAIPTYMVATKSTQAKVRSTSTPKTRIVRN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02042 343 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Trre10g02042 343 Gene3D - 110 163 - -
Trre10g02042 343 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Trre10g02042 343 ProSiteProfiles IQ motif profile. 112 136 IPR000048 GO:0005515
Trre10g02042 343 Pfam Protein of unknown function (DUF4005) 296 339 IPR025064 -
Trre10g02042 343 SMART iq_5 111 133 IPR000048 GO:0005515
Trre10g02042 343 SMART iq_5 134 155 IPR000048 GO:0005515
Trre10g02042 343 PANTHER IQ-DOMAIN 5-RELATED 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02042 Trre-Chr10 20165241 20167149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02042 3 339 IQD Protein Family AT5G13460 39.840 3.50e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02042 - - tpra:123883685 595.89