Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02040 ATGTTCGGACTCTCCCAACCTGCTTCGGATACTCCCAAATCCACCATCAAATTCCTCTGTAGTTACGGCGGCAAAATCCTCCCCCGCTACCCCGACGGCAAACTCCGTTACCTCGGCGGCCATACACGTGTCCTCTCCGTCGATCGCACTATTCAATTTTCCGAACTCCTTTCGAAGCTAGAAGAACTGTGCGGTTCATCCGTGACGCATCTTCGCTGTCAGCTACCCGCCGAAGATCTCGACGCTTTGGTTTCCATTACCTCCGATGAGGATCTCGTCAATCTAACCGAAGAATATGATCGTACCGCCTCGCCGCAATTACCGTTGAAGATCAAAGCGTTCATTTCGCCTCCGAGATCTTCGAATAAGGTTTCCAAACCTCCATTACCGACTATATCGAAATCAGCATCTGTTTCCTCCTCATCCTCTGTATCGTCGACATCTTCTTCATCGTCTTATTGTAGCCTTACCGGTGGAGGTTCCGGTCGGAAGTATGCGGTTGAGCCGCCCGTAGCCTACCGCTGCGTTCATCATATGTCGTCTCCAACGGCGAATCATGTCAACATGGAGAGATCTTCCCGGAGGAATATTCCCCTGCAGGGCAACTGCAACCAGTGGCAATAA 624 0.5128 MFGLSQPASDTPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVLSVDRTIQFSELLSKLEELCGSSVTHLRCQLPAEDLDALVSITSDEDLVNLTEEYDRTASPQLPLKIKAFISPPRSSNKVSKPPLPTISKSASVSSSSSVSSTSSSSSYCSLTGGGSGRKYAVEPPVAYRCVHHMSSPTANHVNMERSSRRNIPLQGNCNQWQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02040 207 MobiDBLite consensus disorder prediction 118 153 - -
Trre10g02040 207 CDD PB1_UP2 19 115 - -
Trre10g02040 207 Pfam PB1 domain 32 110 IPR000270 GO:0005515
Trre10g02040 207 PANTHER OS05G0427100 PROTEIN-RELATED 11 159 - -
Trre10g02040 207 Gene3D - 34 113 - -
Trre10g02040 207 MobiDBLite consensus disorder prediction 187 207 - -
Trre10g02040 207 SUPERFAMILY CAD & PB1 domains 32 123 - -
Trre10g02040 207 SMART PB1_new 30 118 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02040 Trre-Chr10 19977400 19978115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02040 16 115 MAP Kinase Kinase Kinase AT5G57610 50.000 4.28e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02040 - - tpra:123903888 365.925