Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g02036 ATGGAAGAAGCACTTCACCGTCTCAACGGAACTTCCCCAACAATCATACCTGACATACTCGAAACAAAAAAACCAACAACAAAAAGAACATCACGCGAAAACACAACAACAACAACAAGCACCGGAAACGGCGGCGCACTTCGTTACCGTGGAGTACGCCGTCGACCATGGGGTCGTTACGCAGCTGAAATAAGAGACCCACAGTCAAAAGAACGCCGTTGGCTTGGTACTTTCGATACAGCTGAAGAAGCTGCTTGTGCTTATGACTGCGCCGCACGTGCCATGCGTGGTATCAAAGCTCGCACCAATTTCGTTTACCCAACTTCTCCATCACCACACTCCACCACCACTTTCCCTTCTTTCAACTTCCCTAAACATTCTCAAACTAACCGCCACGTGTCTACTTCTGGTTGGTCTGAACAACAACAACAACCTCCTGCTGCTATTGATTTCTCTCATAACAGAAACCCTTCATCTTCTTCTTCTTCTTCACTTGACATGCTTCTATTTCGTGATTTCACCAACTCTTCAAATCATCACTCCCACGATAATTTTCCTTATTCTCACAACAACAACAACGGTCGTTCTAGCTCTGCGTTTTTACCAGGTTGTTGTTTGGTGAATTCTTGTGGAGGGGGTGCAAATAGTAACATGAACAACAATGCTTTTGGAGCTGTAGATGTGAATAATGGGAACATAGTTACTTCTGCTGATGAAGATTCGGATTTTTTCCCTAAAGAATCTTCTGATTCTGGTTTACTGGAAGAGATTGTGAGTAAATTTTTACCTAAACCTAAGCAAGAGATTAAAACTGGGATTTTGCCAAAGACAGGATCTTTATCTGACCCTTTTGTTTCTACTGCACCTGTGTATGATCACATGCTTGAGATGAAAAAAGGGATTACAAAGAATGAATTTTTAGGTGTTGGGTATGCTCAAAATGGTTTTAATATGCAGCAGTATGAAAATTTCAATAATGGGTTTAGTAATTTTCAGTCTGTTCCTGTTGGGAATGAACAAATTATGGTGAATCATGCTGAGAATTATGTCATTCAGTATCAAGAGTTTCTTGATGCTTTTGCACTCAGGATGCAAAATGCTTAG 1104 0.4121 MEEALHRLNGTSPTIIPDILETKKPTTKRTSRENTTTTTSTGNGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPTSPSPHSTTTFPSFNFPKHSQTNRHVSTSGWSEQQQQPPAAIDFSHNRNPSSSSSSSLDMLLFRDFTNSSNHHSHDNFPYSHNNNNGRSSSAFLPGCCLVNSCGGGANSNMNNNAFGAVDVNNGNIVTSADEDSDFFPKESSDSGLLEEIVSKFLPKPKQEIKTGILPKTGSLSDPFVSTAPVYDHMLEMKKGITKNEFLGVGYAQNGFNMQQYENFNNGFSNFQSVPVGNEQIMVNHAENYVIQYQEFLDAFALRMQNA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g02036 367 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Trre10g02036 367 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 194 - -
Trre10g02036 367 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Trre10g02036 367 MobiDBLite consensus disorder prediction 31 45 - -
Trre10g02036 367 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Trre10g02036 367 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Trre10g02036 367 MobiDBLite consensus disorder prediction 1 48 - -
Trre10g02036 367 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Trre10g02036 367 MobiDBLite consensus disorder prediction 107 163 - -
Trre10g02036 367 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Trre10g02036 367 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Trre10g02036 367 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Trre10g02036 367 FunFam Ethylene-responsive transcription factor 2 48 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g02036 Trre-Chr10 19937191 19938294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g02036 1 332 AP2-EREBP Transcription Factor Family AT1G24590 34.688 2.11e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre10g02036 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g02036 - - psat:127121366 427.557