Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01993 ATGGATTTTGAAGATCAAGAAGAACAAGAAGAGGAAGAGTTATGTGCGAGTTATGACTCGTTACCTAACTCATCCCGAGTTAAGATGCCAGGTGGAACCGAACCTATCATGGTGACTCAGCCACTCAGAAACATCATCCTCAACAACAACAACGGAAACAGTAACAACATCGGTGTCGGAAACGGAAAATCAAGATATAGAGAATGTTTAAAAAATCATGCTGTCGGAATTGGTGGTCATGCTCTAGATGGTTGCGGCGAGTTTATGCCAGCAGGAAATGAAGGAAGTTTAGAATCGTTAAAATGTGCTGCTTGTAACTGTCACCGCAATTTCCACCGGAAAGAGACAACGGATATAACCGGTGACCCTTTTTTGTTGACACATCATAGTCACCATCCACCACCTCCGCCGCAGTTCGCGGCGTATTATCGAACTCCTGCAGGGTATTTACACGTTTCTGGACAGCAGAGGACGGGGACACTTGCTCTGCCGTCAACTTCAGGTGGCGGTGGAGGGACTCAGAGTACGAGAGAGGAGCAAGAAGATGTTTCGAATCCGAGTGGTGGTGGGTCAAGTAAGAAGAGACATAGAACAAAGTTCACACCGGAGCAGAAAGATAAGATGTTGGAATTAGCTGAAAAATTGGGTTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTTTGCAATGAAAGTGGTGTTAAGCGTCATGTTCTCAAAGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 771 0.4462 MDFEDQEEQEEEELCASYDSLPNSSRVKMPGGTEPIMVTQPLRNIILNNNNGNSNNIGVGNGKSRYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKETTDITGDPFLLTHHSHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREEQEDVSNPSGGGSSKKRHRTKFTPEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01993 256 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g01993 256 MobiDBLite consensus disorder prediction 159 202 - -
Trre10g01993 256 FunFam Zinc-finger homeodomain protein 2 179 254 - -
Trre10g01993 256 SUPERFAMILY Homeodomain-like 182 254 IPR009057 -
Trre10g01993 256 NCBIfam homeobox domain, ZF-HD class 193 249 IPR006455 -
Trre10g01993 256 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Trre10g01993 256 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
Trre10g01993 256 Gene3D - 177 253 - -
Trre10g01993 256 MobiDBLite consensus disorder prediction 159 191 - -
Trre10g01993 256 MobiDBLite consensus disorder prediction 1 30 - -
Trre10g01993 256 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 115 IPR006456 -
Trre10g01993 256 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01993 Trre-Chr10 19342589 19343359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01993 62 252 ZF-HD Transcription Factor Family AT4G24660 53.927 1.88e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre10g01993 ZF-HD_dimer 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01993 - - gmx:100808910 299.286