Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01988 ATGGCTGAAAGTTTTGACAGTGCTACATCCAATCTTTTATGTTCTGAGAACAATAGCACATGTTTTGATGATGATTTGGAATTTAATGATGTTTTTGATGGTTCTGGAATCTCACCTTCATGGGATTACACAAACCTTAACTTGGACAACGTTGGATCGGAATCATTTGTTTGTTTTGTTGCACAGAGTGAGGAAATTGTGAAGGTTATGGTTGAGAAAGAGAAGGATCATTTGCCAAGAGATGATTACTTGATGAGATTGCGTAGTGGTGATTTGGATTTGAGTGTTAGAAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCTTACTATGGATTTGGACCCTTAAGCCTTTGCCTATCTGTGAACTACTTGGATCGATTTCTATCGGTTTATCAGTTACCGAAAGGTGTGAGTTGGACTGTGCAATTGTTAGCTGTAGCTTGCTTTTCACTTGCGGCTAAAATGGAGGAAGTAAAAGTGCCTCATTCTGTGGATTTGCAGGTTGGAGAACCAAGGTTTATATTCCATGCTAAAACAATTCAAAGAATGGAACTAATGGTATTAAGCACATTAGGATGGAAAATGCAGGCTTTAACTCCTTGTTCCTTCATAGACTATTTCCTTGCTAAAATCAGTTGCGAGAAGCATGCGGAAAAGTCATCGATTGCAAGATCAGTACAGCTTATCCTTAACATAATCAAGGGTATTGACTTCTTGGAATTCAGATATTCTGAAATCGCTGCAGCGGTGGCAATTTCTGTGTTAAAGGAGGTTCCAGTACAAGAAGTTGATAAGGCCATAACTGATTTTGTCATTGTAGAAAAGGATAGAGTTCTAAAGTGTGTTGAAATGATAAAAGATCTTTCCTTGATCAAGGTTGGTGCTACTAAGTATACAACATTTGTGCCTCAAAGCCCTATTGGGGTGCTTGATACAGGTTGCATGAGTTTTAAGAGTGATGAATTAACAAATGGGTCATGTCCAAATTCTTTACATAATAGTCCAAATACTAAAAGGAGAAAAATTGATGGTCCTTCTAATGGATCTTCACAATGA 1059 0.3787 MAESFDSATSNLLCSENNSTCFDDDLEFNDVFDGSGISPSWDYTNLNLDNVGSESFVCFVAQSEEIVKVMVEKEKDHLPRDDYLMRLRSGDLDLSVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSVYQLPKGVSWTVQLLAVACFSLAAKMEEVKVPHSVDLQVGEPRFIFHAKTIQRMELMVLSTLGWKMQALTPCSFIDYFLAKISCEKHAEKSSIARSVQLILNIIKGIDFLEFRYSEIAAAVAISVLKEVPVQEVDKAITDFVIVEKDRVLKCVEMIKDLSLIKVGATKYTTFVPQSPIGVLDTGCMSFKSDELTNGSCPNSLHNSPNTKRRKIDGPSNGSSQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01988 352 FunFam D6-type cyclin 195 284 - -
Trre10g01988 352 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Trre10g01988 352 Pfam Cyclin, N-terminal domain 65 196 IPR006671 -
Trre10g01988 352 PANTHER CYCLINS 59 293 IPR039361 -
Trre10g01988 352 Gene3D - 69 286 - -
Trre10g01988 352 FunFam D2/4-type cyclin 80 194 - -
Trre10g01988 352 SMART Cyclin_C_2 199 322 IPR004367 -
Trre10g01988 352 Pfam Cyclin, C-terminal domain 200 299 IPR004367 -
Trre10g01988 352 MobiDBLite consensus disorder prediction 327 352 - -
Trre10g01988 352 SUPERFAMILY Cyclin-like 56 196 IPR036915 -
Trre10g01988 352 CDD CYCLIN_AtCycD-like_rpt2 200 286 - -
Trre10g01988 352 Gene3D - 80 197 - -
Trre10g01988 352 CDD CYCLIN_AtCycD-like_rpt1 96 194 - -
Trre10g01988 352 SMART cyclin_7 102 190 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01988 Trre-Chr10 19294526 19296612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01988 61 259 Core Cell Cycle Gene Families AT5G65420 62.189 9.36e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01988 K18810 - gmx:100794010 486.878