Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01986 ATGAGGGAAATACTGGAAAGACATCATTTACACTCAAAGAACCTCGCAAAGCTGGAAGAACCGTCTCTCGAGTTACAGCTAGTTGAAAACAGTAACTGCTCAAGATTGAGCAAGGAAATTGCTGAGAAGAGCCATCAACTAAGGCAGATGAGGGGTGAGGATCTTGAAGGTTTGAATGTTGAACAATTACAACAATTGGAGAGATCTCTTGAAATTGGGTTGGGCCGTGTAATAGAAAACAAGGGAGAGAAGATCATGATGGAGATCAGTGATCTCCAAAGAAAGGGAAGACAACTGATGGAAGAGAACGACCGACTAAAGCGACATGTGGCAGGCATAGTGGTTAATGGTAAAATGGTTGGAGGAGTTGAATCTGAAAATGTGGTTACTGAAGAAGGCCAATCCTCAGAATCTGTCACCAATGTTTACAACTCCACTGGTCCTCCCCAGGACTATGAGAGCTCAGACACATCACTCAAATTGGGTCTTCCATATGCCGGCTGA 504 0.4385 MREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEIAEKSHQLRQMRGEDLEGLNVEQLQQLERSLEIGLGRVIENKGEKIMMEISDLQRKGRQLMEENDRLKRHVAGIVVNGKMVGGVESENVVTEEGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYAG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01986 167 Coils Coil 89 109 - -
Trre10g01986 167 MobiDBLite consensus disorder prediction 128 167 - -
Trre10g01986 167 ProSiteProfiles K-box domain profile. 26 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre10g01986 167 Coils Coil 33 53 - -
Trre10g01986 167 MobiDBLite consensus disorder prediction 128 157 - -
Trre10g01986 167 Pfam K-box region 31 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01986 Trre-Chr10 19250450 19254331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01986 1 167 MADS-box Gene Family AT2G22540 63.687 3.90e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01986 - - gmx:100789126 275.018