Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01979 ATGGTTTTACTTCGACAGGGAATGCAACATGTTCGAAATTACTATAATTCAGAAGCTCAAATGATAAGAAACAACTTATCACGGTCGACATTCATCTCACAAACATACAAAAGCAGTTTCTTGAAGCAAAGATCAAAGGTAGAGAACAAATTACTAGCAGCCAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCGATATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAATACTAGTGGAGACTATCAAGCAAGTGAAGGAGTTGAAGAAAAAAGCATCAAAACTAGAAGAAGATAATCATGGTACCTCAAAAGAGGTCAAGTTTCCAAGTGGATTAGACAAATTGAATTTGGAAAAATGTAATGATGTGGAGGGCTTAGTGAAGGCTACATTAAGTTGTGAGGATAGACCAGGATTAATGTCTTCTATAGCAAGAGCATTAGGGTCAATGAAAGCCAAAGTTGTAAAAGCTGAGATGGTGATAGTAGGTGGAAGAAACAGAAGTGTGTTGTGGGTGCGAGGTATTGAAAATGAAGGTTTAGGGATGCTTAAGAGTACTTTAAAAGTTGTCATGCATAAGCCAAGCTTTAAGATGAGGAGGTTTACTCAATAA 651 0.381 MVLLRQGMQHVRNYYNSEAQMIRNNLSRSTFISQTYKSSFLKQRSKVENKLLAAKKHSEAEKRRRMRINGQYDTLRDILPNLIKKDKASILVETIKQVKELKKKASKLEEDNHGTSKEVKFPSGLDKLNLEKCNDVEGLVKATLSCEDRPGLMSSIARALGSMKAKVVKAEMVIVGGRNRSVLWVRGIENEGLGMLKSTLKVVMHKPSFKMRRFTQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01979 216 SMART finulus 58 107 IPR011598 GO:0046983
Trre10g01979 216 PANTHER TRANSCRIPTION FACTOR BHLH30 27 208 IPR045847 GO:0003700|GO:0006355
Trre10g01979 216 SUPERFAMILY ACT-like 141 206 IPR045865 -
Trre10g01979 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Trre10g01979 216 Gene3D - 53 122 IPR036638 GO:0046983
Trre10g01979 216 Gene3D - 135 212 - -
Trre10g01979 216 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Trre10g01979 216 CDD ACT_UUR-ACR-like 143 193 - -
Trre10g01979 216 Coils Coil 91 118 - -
Trre10g01979 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01979 Trre-Chr10 19136942 19137928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01979 51 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.012 2.73e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g01979 HLH 8.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01979 - - gmx:102667782 293.893