Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01962 ATGGCGTGGCTGGAGCTTGGAAAGGAAATATATATGAATTTTACCAGAGCTTTGGCTACAACGTCACGTAGGCATGTGGTGGGGTCAAATTTTACTTCTATATTTGCTGAACAATCTGTTTATGCTTCAGCAAGACGCACGCCTGATTTCATCAATTGCTCATATCTGGGTGCGGCTGGTTTTTGTAGTGGGACTAAAGAATGTGGAATACGGTGCTTCCATGCAAGCTCACAAGTCTGGGCAAGAAGTGATGCGGCATACGGTTTGAAGACCCCAAAGAAGGAGAAGTATGTGAGAAGAGACAGTAGAAACCAGCCTCCCGTTGAAGCTCCATACGTCCCTCGTAATGTTGCAGCAACCAAATCTAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTTGCAAAGCGTACTGGAAAATCATTATCTTCTTTGCAAGATATTCTCACAAATGTTGGTGAAAAGATTGAATCCGAGTTTGATCCTCTCAGTATGGATATTGCCGAGCTTGCTGCAATGGAGGTCGGCGTCAATGTTAAGAGATTACATTCAACTGAAGGTTCAGAAATTTTACCACGCCCTGCAGTTGTAACAGTGATGGGCCATGTTGATCACGGAAAAACTTCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATTACTCAGCATCTTGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGATACTCCGGGTCATGCTGCATTTAGTGCAATGCGTGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTGTCACATGCAAAATCAGCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTAAAACTACAGCTTGCTTCCGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATATTCAGGTTGTTGAAGTCTCAGCGATTAAAAAGATTGGACTGGATAACCTAGAGGTAGCTTTACTCCTTCAGGCTGATATGATGGATCTTAAAGCACGATTTGATGGGCCTGCTCAAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTGACTACTATAGTGAAGGCTGGGACTTTAGTTTGTGGACAGCATGTGGTTGTTGGCTCACAGTGGGGAAGAATCAGGGCTATTAAAGATGCAGCAGGGAGGTCAACTCAACGAGCAACTCCGGCAATGCCTGTTGAGATTGAAGGGCTTCGGGGGTTGCCAATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATCTGAAGAAGACAGGCTTAGGGGAAAGATGGTGCAGAATATCCCAACTACTACAGATGATACTGAGGAGGTTCCGCCGAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTTGCAGATGCATTGACAACTTTAAATAGTCCTCAGGTTTCTGTGAATATTGTCCATGTTGGGGTGGGGCCTATTTCTCAATCTGACGTGGACTTAGCACAAGCTTGCGGTGCATGTATAGTTGGATTCAATGTCAAGAGTCCACCTATTTCTCTTAGCCAGGCAGCAACTCGTGCTAGTATCAAGGTAATTGTGCATCGAGTGATTTACCACTTATTGGAAGACATAGCCAATTTGATAATAGACAAGGCCCCAGGTACTTCCGAGACTCAGGTAGCTGGGCAAGCAGAAGTGCTGAATATATTTGAAGTGAAAGGGAGCAAATCTAAGGGACCAGATGTGAAAATAGCTGGTTGTAAGGTTGTTGAAGGTCTTGTGAACAGGACAGCAACCATGAGGCTTCTACGGAGCGGTGAAGTGGTGTTTGAAGGACCTTGTTCATCTCTTAAGAGGGAGAAGCAGGATGTGGATTCTGTGAAGAAGGGAACTGAGTGTGGACTAGTAATCAGTAACTGTCATGATTTTCAGATTGGTGATGTTATCCAGTGCTTAGAACAAGTAGTTAGGAAGCCTAAGTTTATTAAGTCGGAGAGTGGCGCTGTTCGAATAGAGTGTTGA 2157 0.4478 MAWLELGKEIYMNFTRALATTSRRHVVGSNFTSIFAEQSVYASARRTPDFINCSYLGAAGFCSGTKECGIRCFHASSQVWARSDAAYGLKTPKKEKYVRRDSRNQPPVEAPYVPRNVAATKSNPDKTIEIFEGMTLVELAKRTGKSLSSLQDILTNVGEKIESEFDPLSMDIAELAAMEVGVNVKRLHSTEGSEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKSANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAIKKIGLDNLEVALLLQADMMDLKARFDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDAAGRSTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKSEEDRLRGKMVQNIPTTTDDTEEVPPRVEMPVIVKADVQGTVQAVADALTTLNSPQVSVNIVHVGVGPISQSDVDLAQACGACIVGFNVKSPPISLSQAATRASIKVIVHRVIYHLLEDIANLIIDKAPGTSETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCKVVEGLVNRTATMRLLRSGEVVFEGPCSSLKREKQDVDSVKKGTECGLVISNCHDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01962 718 Gene3D Translation factors 601 703 - -
Trre10g01962 718 SUPERFAMILY Translation proteins 602 703 IPR009000 -
Trre10g01962 718 Pfam Elongation factor Tu GTP binding domain 202 354 IPR000795 GO:0003924|GO:0005525
Trre10g01962 718 Hamap Translation initiation factor IF-2 [infB]. 5 704 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre10g01962 718 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 197 367 IPR000795 GO:0003924|GO:0005525
Trre10g01962 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 388 IPR027417 -
Trre10g01962 718 Pfam Translation-initiation factor 2 496 589 IPR023115 -
Trre10g01962 718 FunFam Translation initiation factor IF-2 602 705 - -
Trre10g01962 718 Gene3D - 496 598 IPR036925 -
Trre10g01962 718 Gene3D - 195 369 IPR027417 -
Trre10g01962 718 CDD IF2_mtIF2_II 373 468 IPR044145 -
Trre10g01962 718 CDD mtIF2_IVc 607 696 - -
Trre10g01962 718 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 494 606 IPR036925 -
Trre10g01962 718 FunFam Translation initiation factor IF-2 495 600 - -
Trre10g01962 718 NCBIfam small GTP-binding protein domain 200 351 IPR005225 GO:0005525
Trre10g01962 718 Gene3D Translation factors 370 484 - -
Trre10g01962 718 CDD IF2_eIF5B 201 364 - -
Trre10g01962 718 NCBIfam translation initiation factor IF-2 125 701 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Trre10g01962 718 FunFam Translation initiation factor IF-2 194 369 - -
Trre10g01962 718 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 115 712 IPR015760 -
Trre10g01962 718 SUPERFAMILY Translation proteins 371 453 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01962 Trre-Chr10 18743163 18747298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01962 188 682 Eukaryotic Initiation Factors Gene Family AT1G76810 26.270 4.90e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01962 K02519 - gmx:100781314 1169.07