Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01957 ATGGCTCTTCCTGGTTCCTTGCAACTGTCTCATGGTTTGGGACTTTGCAGGAACCTAAGCTCCAATAAAGATATGAGGGTAAAGGGGAGATGCAAGTTACAGTTGTTCAATGCATGTCCTTCATATCCAGTTTCTTTCATGAAACATGACTACAGGGGTCTCCAACACCTCCGTAATATAAACAGGTCAACACATAGATTGTCTTGCAAATCCCGCTCTTTTAAATGTCATTGTTTCTTAGTGCCAGGCCAACACATTAACCTTCCTGCCGTTAAGGTGGCTACTACAGTGCTGACAAGGTGCTGTAATGTGTTACAAAATAGTCCAGTCGTTGTAAAGTTGATTCCTGCTGTTGGCATTATCATTTTTGCAGTATGGGGTGTTGGTCCATTAATGTTTCAGACAAGGAAACTATTTTTTCAGAAGAGTGATAATAGCTGGAAAAAAAGTACCACTCATTACATAGTAACTTCATATCTTCGACCATTACTGTTATGGACTGGAGCCATACTTATTTGCAGAGCATTTGAGCCAGTAATTCTACCTACAGAAACTAGCCAGGTTGTTAAGGAACGACTTCTGAGTTTCGTTAAATCATTGTCAACTGTAGTGGCTTTTGCCTATTGTTTATCAAGTGTAATTCCACAAGCACAGAAATTTGTAGCAGAGAATGCAGATACAAACGACACACGAAATATGGGATTCCAATTTGCAGGCAAAGCGGTTTATTCTGCAGTATGGGTTGCTGCCTTTTCATTGTTTATGGAATTGCTAGGCTTCTCTACCCAGAAATGGGTTACAGCAGGAGGTTTTGGGACAGTTTTGTTGACTCTCGCTGGTCGTGAGATATTCACAAACTTCCTTTCAAGCGTGATGATTCATGCAACTCGGCCTTTTGTGGTAAATGAATGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGCACTGTTGAGCATGTTGGCTGGTGGTCTCCAACAATTATACGTGGCGAAGATCGTGAAGCTGTACACATACCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTCACTCAAAAAACACATTGGAGAATTAAAACCCACCTAGCCATTAGTCATTTGGATGTAAATAAGATTAACATCATTGTTGCCGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTCTGGACAATGTAAACCCTGAAAATCAGGCTCTTATGATTCTGATTTCTTGTTTTGTCAAGACCTCACATTTTGAAGAATATTTGTGTGTTAAGGAAACTATACTATTGGATCTTCTTAGAGTTATCAGCCATCACCGGGCCCGGCTTGCAACACCAGTCCGTACTATACAGAAAATATATAGTGATGCTGACTTGGACAACATACCGTACGCAGATTCCACATTTAATGGTGCTGGAGCAGCATCTAACCGTCTATTAGTGATTGACTCACCGTACAAGAACAGTGCAGATGATAAAACGAAAAGTCGATCAGCACGTGCAACTGGTGATCAAGATAACAAGACAACTGTGAAAACCAAACTTGATACCAAGACAGACGACAAGGTTGGACCAATAGGAGCACCAGATACCAAGGTTAGAGGAACACAAGATGACTCTGAGGTGGATGCCAAAGTCATGGCATCTAACTCTGATGCAAATGGAAACTCTAAACCTGATTCTGAAGTGGATGAAAACAAGCCACTCAAATCAAATGTAAACAAGGTAAATGTGGAGGTTCCAACCATGGCTTCTAATTCTACCTCCAAAGTAACTGGTTCCGAAGTAGATAACTCAACCCAGAAGGACATCCATGTCAAACAATCCAAGGGTCAAACCATTAAAAACATCAAACCAAACATCGACTCTGACAATCTAGTTTCCTCATCAACAAACAACACTGACAAAGGCAATGGAAATACACCAACAAAACAGCAAGGAGAAAGGAAACCTGCCGCATCCAGGCCTATTCTTGAAGAGAATATAGTACTGGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCTATTGATGAGGGGATTGACGCCGTGACAACTCAAGAGACAAAGGAAATGGCATCACACCAGGGTGGAAATGGATCTCCAAAGGCTTCAGATGGGAATGTGAAGTAA 2154 0.415 MALPGSLQLSHGLGLCRNLSSNKDMRVKGRCKLQLFNACPSYPVSFMKHDYRGLQHLRNINRSTHRLSCKSRSFKCHCFLVPGQHINLPAVKVATTVLTRCCNVLQNSPVVVKLIPAVGIIIFAVWGVGPLMFQTRKLFFQKSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRAFEPVILPTETSQVVKERLLSFVKSLSTVVAFAYCLSSVIPQAQKFVAENADTNDTRNMGFQFAGKAVYSAVWVAAFSLFMELLGFSTQKWVTAGGFGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINIIVADMRKVLAKNPQVEQQRLHRRVFLDNVNPENQALMILISCFVKTSHFEEYLCVKETILLDLLRVISHHRARLATPVRTIQKIYSDADLDNIPYADSTFNGAGAASNRLLVIDSPYKNSADDKTKSRSARATGDQDNKTTVKTKLDTKTDDKVGPIGAPDTKVRGTQDDSEVDAKVMASNSDANGNSKPDSEVDENKPLKSNVNKVNVEVPTMASNSTSKVTGSEVDNSTQKDIHVKQSKGQTIKNIKPNIDSDNLVSSSTNNTDKGNGNTPTKQQGERKPAASRPILEENIVLGVALEGSKRTLPIDEGIDAVTTQETKEMASHQGGNGSPKASDGNVK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01957 717 Gene3D - 299 354 IPR023408 -
Trre10g01957 717 MobiDBLite consensus disorder prediction 550 564 - -
Trre10g01957 717 MobiDBLite consensus disorder prediction 591 663 - -
Trre10g01957 717 MobiDBLite consensus disorder prediction 494 578 - -
Trre10g01957 717 MobiDBLite consensus disorder prediction 495 534 - -
Trre10g01957 717 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Trre10g01957 717 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 703 IPR045042 -
Trre10g01957 717 MobiDBLite consensus disorder prediction 694 717 - -
Trre10g01957 717 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Trre10g01957 717 MobiDBLite consensus disorder prediction 676 717 - -
Trre10g01957 717 MobiDBLite consensus disorder prediction 591 655 - -
Trre10g01957 717 Gene3D - 193 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01957 Trre-Chr10 18699463 18705648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01957 9 717 Mechanosensitive Ion Channel Family AT5G10490 54.902 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01957 K22047 - gmx:100789444 1100.12