Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01953 ATGGTGAGAGGCAACAGAGGATACATGGTCTCTCACACTGCCTCTACCAACAACAACAACAATTGGATGATGCCAACACCATCATCAACACAATTGTCCTTCAGTAGGTATATCGGTCTTCCTCAAGAATCAAGGGAGGAACTTATCACATCCTCCTCCAAAAAGCCTAGAGTTAGACCCGTCGGATCTAAGAACAAGCCTAAACCATCTGTTGTAGTCAAGGAAAACACAGATGCCACCATGGAAACAATTCTCATTGAGATCCATGGTGGCGAAGATATTATGGAGGCTTTAATAGACTTGGCTGGACATCATCGGTCTATCATAACAGTATTGAAGGATTATGGTTTTGTCACTGACGTTACACTTATCAATCTGGTGTCTCATGCCCTACTTTTTCCCATCGAAGGAATGTTCCATATGATGTGTCTATCTAGAACATACCTAAATGCCTATTGTGGCATGTTCCTCCTCAATTCATCACTAATCATGTATTGTCCTCTTTTTCGATATGCCTTTCTCGAGGTGGTGGATGGATGTTTGGTGGAATTGTTAGAGGGACAATTAAGGTTGTTGATGGTGTTTTGGTTTCTCTTTTTAAAAAACTCCAATTTTGTAGGCTTACCACTCTCTATGGAAGAGTTCTTGAAATTGAAGAGCATGTTGAACATGAATCCAACAACAATGTCATTAACATGTCAGGTTAATTAA 711 0.4023 MVRGNRGYMVSHTASTNNNNNWMMPTPSSTQLSFSRYIGLPQESREELITSSSKKPRVRPVGSKNKPKPSVVVKENTDATMETILIEIHGGEDIMEALIDLAGHHRSIITVLKDYGFVTDVTLINLVSHALLFPIEGMFHMMCLSRTYLNAYCGMFLLNSSLIMYCPLFRYAFLEVVDGCLVELLEGQLRLLMVFWFLFLKNSNFVGLPLSMEEFLKLKSMLNMNPTTMSLTCQVN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01953 236 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 151 IPR014476 GO:0003680
Trre10g01953 236 MobiDBLite consensus disorder prediction 9 24 - -
Trre10g01953 236 MobiDBLite consensus disorder prediction 1 24 - -
Trre10g01953 236 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01953 Trre-Chr10 18580077 18580787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01953 53 144 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 35.870 2.43e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01953 - K00856 tpra:123922662 172.555