Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01942 ATGGATGCAACACAAAAAGAGAAAATATATGTTGCTATTGGTGATGATGCACAAGATGGATTTAATACTTTAAATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAACATTTCTAAGGATTATGTTTATACACCATTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGTTGTTTTCCAAATATATTGCTTTCTGTGGCAAGGTGTCAGCAGAAATCGTTGAAGTTGAAAAACTCAATGAGTCTATGCAAAAGCGTGTCATAGACTTAATAATTGAACTAGGGATTACCAAATTGGTCATGGGATTTTCATTCATGAAGCCTTCCTTGAAATCAAAAGGTGCTATTAGTGGACTATTCTATGTTCATCAACACAAGTCTAGTTTATGTGAATTATTCATTATATGTGGTGGCAAGCAAGTTTTTCTAAGGGGAAACAATGATGAAAAAATCATGGAAGATGATAGTGGAGTCATGGTTGCTAAAATAAGAGATAAGGTAACTTTTAAAGATTGGCTAGACAAAATGTTTAGTGACAAAACCAATGATTATTCTCATAATAGATTAAGTGCATCTCCTTCAACAATCAATTTGGTCCAAAATCAATGGGAATTTTATCTTCAAGACATAGAAAATTATTATCAAGAATTGTTATCATCAAATTTGGAAGAAGGAAGCTATGTGCAAGACAATGATGACTCACACATTAGTCCAATTGAGCCACATGTCACTGAATTGAACAGTTCTAATAAGAATACTACAGAAAAAATTGAGATCCTGAAAAATAGACTAAACGAAGCTCACAAAACCATTGAGTTGAAGAGGAAAGAGACTAAGGAAAATATAGAGAGACGCACAAAAGCTGAATGGGCAATTAGCTTATGCAACAGCAGGGCCGAAGAAATTGAGGGTAGAATAAGGGAAGAAATAAGTACAAAGGAGGGCCTAAACAAGGAATTGCAATTGGAGAAAGATCAAGGAGAAGAAATGAGAATGGAGATCGAAGAGAGAAAACGAAGAATGAGTTCATTGGTGGAGCTTCAATCAGAACTATCAAACAAGCTTCAAATTTCAACAATAGCAAGATCAAGAGCAGAGACACAAGTGGAGAGAGCGGTGAGGGAGAGGGCCGAAATGGTGAGAGAGATAGAGGAGTTAAGGAAGCAGAGAGACGTGTTGAATAGAAGGATCGAGTTTTGCAAGCAAAAGGATGCCATAGGTATGGCCGCGAGACTTAGCGACAATGGAGCGAGTTTTGGGATGAGGGAGTATAGTGAGGTGGAGTTGAGGTTGGCGACCGATAACTTTTTGGAGCGGTTGAGGTTGAAGTCTGGTGGGGATTGGAGTAATGTGTATAGAGGACGGTTCAACCATTCTAGTGTTGCAATTAAGATGTTACCTTCTTTTGCTTCTTTGTCTCTAGAGGATTTTCAATCCAAGATGAGGCTTCTTGGTGATATTAGGCAACCACATCTAGTAGCCATGGTGGGCTTCTGCTCTGAGCCCAAATGCATAATTTTGGAATACATGGGCAACGGAAGCTTACAAGACATGCTATTTTCTAGGCGAAGAAATCGGGGCTTAAGGTGGCACGATCGAATACGAATAGCGACGGAAGTTTGCTCGGGCTTGGGCTTTCTTAACTCATCTCCACAAAGGTCCATTTTTCATTGTCATTTGAACCCAGCCCATGTCCTTCTTGACCGCAATTTAGTCGCAAAAATCACGGGCTTTGAGCTTCAAGACTGCGACGACAAGGAATGCAACGTTGAGTCAGATTTACTGGCCGTAGGGATTTTGTTGATGCAACTTTTGACCGGAAGAGATTGGGCCGGGCCCATCGAAGAGCCCATGACAATGGCTATGGATAGAGAAACATTTGTTAATGTTCTTGATGACATGGCTGGACAATGGCCATTGGATCTAGCAAAAGAGATTATGGGCCTAGCTATGATTTGCATGTCTGTGAAAAGCAAGCCCAACCTAAATTTAAGCATCGCAAGGGTCTTGGAGGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAGGAAGATAGAAAGGTAATTATTGGTGGATGCATAGATAGAGAGGGCTCTAGTGATGTTCCTAGTGTTTTCCTTTGCCCTATACTTCAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCATATGAGCTTGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAATTTAAGGCTGAAACACACATTACTTACACCAAATTACACACTCCGTTCCTTCCTTGAGGAATGGCAGACCAACAAATCAGCTCAAATTGCAAATTAA 2421 0.3945 MDATQKEKIYVAIGDDAQDGFNTLNWALKKWNSHPISIVILHVTHNISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEIVEVEKLNESMQKRVIDLIIELGITKLVMGFSFMKPSLKSKGAISGLFYVHQHKSSLCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKIRDKVTFKDWLDKMFSDKTNDYSHNRLSASPSTINLVQNQWEFYLQDIENYYQELLSSNLEEGSYVQDNDDSHISPIEPHVTELNSSNKNTTEKIEILKNRLNEAHKTIELKRKETKENIERRTKAEWAISLCNSRAEEIEGRIREEISTKEGLNKELQLEKDQGEEMRMEIEERKRRMSSLVELQSELSNKLQISTIARSRAETQVERAVRERAEMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNGASFGMREYSEVELRLATDNFLERLRLKSGGDWSNVYRGRFNHSSVAIKMLPSFASLSLEDFQSKMRLLGDIRQPHLVAMVGFCSEPKCIILEYMGNGSLQDMLFSRRRNRGLRWHDRIRIATEVCSGLGFLNSSPQRSIFHCHLNPAHVLLDRNLVAKITGFELQDCDDKECNVESDLLAVGILLMQLLTGRDWAGPIEEPMTMAMDRETFVNVLDDMAGQWPLDLAKEIMGLAMICMSVKSKPNLNLSIARVLEELNKIRRKGDEIVAKEDRKVIIGGCIDREGSSDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTLLTPNYTLRSFLEEWQTNKSAQIAN 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01942 806 CDD RING-Ubox_WDSUB1-like 731 786 - -
Trre10g01942 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 805 IPR013083 -
Trre10g01942 806 PANTHER OS02G0152300 PROTEIN 9 794 - -
Trre10g01942 806 SUPERFAMILY Protein kinase-like (PK-like) 445 684 IPR011009 -
Trre10g01942 806 SUPERFAMILY RING/U-box 727 802 - -
Trre10g01942 806 Gene3D Phosphorylase Kinase; domain 1 445 534 - -
Trre10g01942 806 Coils Coil 324 362 - -
Trre10g01942 806 Coils Coil 268 306 - -
Trre10g01942 806 Pfam U-box domain 730 801 IPR003613 GO:0004842|GO:0016567
Trre10g01942 806 Coils Coil 387 428 - -
Trre10g01942 806 ProSiteProfiles U-box domain profile. 729 803 IPR003613 GO:0004842|GO:0016567
Trre10g01942 806 Gene3D Transferase(Phosphotransferase) domain 1 536 712 - -
Trre10g01942 806 ProSiteProfiles Protein kinase domain profile. 462 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g01942 806 SMART Ubox_2 733 796 IPR003613 GO:0004842|GO:0016567
Trre10g01942 806 Pfam Protein tyrosine and serine/threonine kinase 471 607 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01942 Trre-Chr10 18432316 18438595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01942 3 806 U-box Gene Family AT5G65500 47.724 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre10g01942 PK_Tyr_Ser-Thr 2.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01942 - - gmx:100786771 1189.48