Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01935 ATGGAAATGTCTCACCTTGATTCATACGACGTCGCTTCATCCGTTACTAACAACAACCACAACTCTCATCAAAATCATCATCACTATTTCCTTGACAACATGTATCATCACAATGCGTGGGGGAATATTAACGGAGACACAAAGAGCACTGAAGCAGCAGCACCAGCAGTACAAGAACAATCGATTTGGTTTATGGATTCAACAACGCAATCACAGGGCGTCGTTAACCACGCGCCGTCACCTAAGCTGAATGATTTTCTCGGTGACAGTCAAGCCGAGACGCAAGATGATTCTTCTTTAACAAACATGTACGATCACCACCATTACTTCGGTGGGGACCACCACCAGCACCAGCAACAACAGAATCATCAGGATCTTGTTGTTACTGGTTTTCAAGCTTTTTCAAACAACTCTGGTGGCTCTGAAGTTGATGATTCTGGTTCGATTGGAAAATCATCACAAGCTGCATGTGGAAATGAGTTTGGAACTCATTGTGTTGAGTCTGGGAGTGAGTTTGCTTACTCAGCTGCCGCGGCTGCTGCTGCGGTTAACGGTGCTTTGTCTCTCGCCGTCGCTCATAGCTCCGAGGAGAATGCTGTTGTTGTTGCTGATTCTGATAGCTCCAAGAAAATCGCTGATACTTTTGGTCAGCGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACTGGAAGATATGAAGCGCATCTATGGGATAACAGCTCTAGAAGGGAGGGTCAAGCTAGGAAGGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAGGAAAAGGCCGCAAGATCCTATGATTTGGCTGCCCTAAAGTATTGGGGACCCACTGCTACTACCAACTTCCCTGTTTCCAGTTATGAAAAGGAATTGGAAGAAATGAAAAGCGTAACTAAGCAAGAATTTATTGCGTCGCTGCGGAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACCGAAGAGGAAGCAGCAGAGGCCTATGACATTGCAGCCATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTGGATGCTATAATGCAGAGTTCTCTTCCAGTTGGTAGTACAGCAAAACGCATGAAGCGCTCCCTTGGGTCTGAACAGAAAGCTTCTGTCACCGGCAATGTTCAGCAGAACAACGCTGAACAGTATGCGGCATGCCTGATTAACAGCAACAAAAGCAGCAACATCAATTTCTCAACCATTCCGCATCAGATGCCAGCTGCACTGAATACAGTCCCTTATGGAATGGTTCCGTATGATTCGAGTCCTACGGCTTATTATCATCATACCCTCTTCCAACATTTCAATTCTGATACCAATGATGGCGCTGCAGAATCTGTTGTGAATTCAACCAATGCAGCAAATGGTGGACTCAATGCAATGCCACCAACATCAGCAGCTGAGTTCTACTTATGGCCTAATCAGTCTTATTGA 1569 0.4576 MEMSHLDSYDVASSVTNNNHNSHQNHHHYFLDNMYHHNAWGNINGDTKSTEAAAPAVQEQSIWFMDSTTQSQGVVNHAPSPKLNDFLGDSQAETQDDSSLTNMYDHHHYFGGDHHQHQQQQNHQDLVVTGFQAFSNNSGGSEVDDSGSIGKSSQAACGNEFGTHCVESGSEFAYSAAAAAAAVNGALSLAVAHSSEENAVVVADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSSRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYEKELEEMKSVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNVQQNNAEQYAACLINSNKSSNINFSTIPHQMPAALNTVPYGMVPYDSSPTAYYHHTLFQHFNSDTNDGAAESVVNSTNAANGGLNAMPPTSAAEFYLWPNQSY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01935 522 SUPERFAMILY DNA-binding domain 322 382 IPR016177 GO:0003677
Trre10g01935 522 ProSiteProfiles AP2/ERF domain profile. 323 381 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 SUPERFAMILY DNA-binding domain 220 289 IPR016177 GO:0003677
Trre10g01935 522 CDD AP2 322 381 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 SMART rav1_2 221 293 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 SMART rav1_2 323 387 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 ProSiteProfiles AP2/ERF domain profile. 221 287 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 438 - -
Trre10g01935 522 FunFam AP2-like ethylene-responsive transcription factor ANT 220 289 - -
Trre10g01935 522 CDD AP2 220 289 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 PRINTS Ethylene responsive element binding protein signature 363 383 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 Gene3D AP2/ERF domain 323 383 IPR036955 GO:0003700|GO:0006355
Trre10g01935 522 Gene3D AP2/ERF domain 221 289 IPR036955 GO:0003700|GO:0006355
Trre10g01935 522 FunFam AP2-like ethylene-responsive transcription factor 322 383 - -
Trre10g01935 522 Pfam AP2 domain 221 279 IPR001471 GO:0003700|GO:0006355
Trre10g01935 522 Pfam AP2 domain 323 373 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01935 Trre-Chr10 18357449 18362327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01935 64 522 AP2-EREBP Transcription Factor Family AT5G10510 53.598 1.42e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre10g01935 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01935 K09285 - gmx:100775390 568.155