Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01934 ATGGCTCGTGCTACTACTACAAGCAACTCTAGTATTAATCATAACTGGCTCTCATTTTCACTCTCACCCATGGAAATGTCTCACCTTGATTCATACGACGTCGCTTCATCCGTTACTAACAACAACCACAACTCTCATCAAAATCATCATCACTATTTCCTTGACAACATGTATCATCACAATGCGTGGGGGAATATTAACGGAGACACAAAGAGCACTGAAGCAGCAGCACCAGCAGTACAAGAACAATCGATTTGGTTTATGGATTCAACAACGCAATCACAGGGCGTCGTTAACCACGCGCCGTCACCTAAGCTGAATGATTTTCTCGGTGACAGTCAAGCCGAGACGCAAGATGATTCTTCTTTAACAAACATGTACGATCACCACCATTACTTCGGTGGGGACCACCACCAGCACCAGCAACAACAGAATCATCAGGATCTTGTTGTTACTGGTTTTCAAGCTTTTTCAAACAACTCTGGTGGCTCTGAAGTTGATGATTCTGGTTCGATTGGAAAATCATCACAAGCTGCATGTGGAAATGAGTTTGGAACTCATTGTGTTGAGTCTGGGAGTGAGTTTGCTTACTCAGCTGCCGCGGCTGCTGCTGCGGTTAACGGTGCTTTGTCTCTCGCCGTCGCTCATAGCTCCGAGGAGAATGCTGTTGTTGTTGCTGATTCTGATAGCTCCAAGAAAATCGCTGATACTTTTGGTCAGCGAACTTCAATTTACCGTGGTGTCACTAGGCATAGATGGACTGGAAGATATGAAGCGCATCTATGGGATAACAGCTCTAGAAGGGAGGGTCAAGCTAGGAAGGGGCGTCAAGGTGGATATGACAAGGAGGAAAAGGCCGCAAGATCCTATGATTTGGCTGCCCTAAAGTATTGGGGACCCACTGCTACTACCAACTTCCCTGTTTCCAGTTATGAAAAGGAATTGGAAGAAATGAAAAGCGTAACTAAGCAAGAATTTATTGCGTCGCTGCGGAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTTGCCGGAAACAAAGACCTGTACTTGGGAACATTTGCAACCGAAGAGGAAGCAGCAGAGGCCTATGACATTGCAGCCATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATATGATGTGGATGCTATAATGCAGAGTTCTCTTCCAGTTGGTAGTACAGCAAAACGCATGAAGCGCTCCCTTGGGTCTGAACAGAAAGCTTCTGTCACCGGCAATGTTCAGCAGAACAACGCTGAACAGTATGCGGCATGCCTGATTAACAGCAACAAAAGCAGCAACATCAATTTCTCAACCATTCCGCATCAGATGCCAGCTGCACTGAATACAGTCCCTTATGGAATGGTTCCGTATGATTCGAGTCCTACGGCTTATTATCATCATACCCTCTTCCAACATTTCAATTCTGATACCAATGATGGCGCTGCAGAATCTGTTGTGAATTCAACCAATGCAGCAAATGGTGGACTCAATGCAATGCCACCAACATCAGCAGCTGAGTTCTACTTATGGCCTAATCAGTCTTATTGA 1629 0.4567 MARATTTSNSSINHNWLSFSLSPMEMSHLDSYDVASSVTNNNHNSHQNHHHYFLDNMYHHNAWGNINGDTKSTEAAAPAVQEQSIWFMDSTTQSQGVVNHAPSPKLNDFLGDSQAETQDDSSLTNMYDHHHYFGGDHHQHQQQQNHQDLVVTGFQAFSNNSGGSEVDDSGSIGKSSQAACGNEFGTHCVESGSEFAYSAAAAAAAVNGALSLAVAHSSEENAVVVADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSSRREGQARKGRQGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYEKELEEMKSVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNVQQNNAEQYAACLINSNKSSNINFSTIPHQMPAALNTVPYGMVPYDSSPTAYYHHTLFQHFNSDTNDGAAESVVNSTNAANGGLNAMPPTSAAEFYLWPNQSY 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01934 542 CDD AP2 342 401 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 SUPERFAMILY DNA-binding domain 342 402 IPR016177 GO:0003677
Trre10g01934 542 SUPERFAMILY DNA-binding domain 243 309 IPR016177 GO:0003677
Trre10g01934 542 Gene3D AP2/ERF domain 343 403 IPR036955 GO:0003700|GO:0006355
Trre10g01934 542 Gene3D AP2/ERF domain 244 309 IPR036955 GO:0003700|GO:0006355
Trre10g01934 542 PRINTS Ethylene responsive element binding protein signature 383 403 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 Pfam AP2 domain 244 299 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 Pfam AP2 domain 343 393 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 FunFam AP2-like ethylene-responsive transcription factor ANT 243 309 - -
Trre10g01934 542 FunFam AP2-like ethylene-responsive transcription factor 342 403 - -
Trre10g01934 542 CDD AP2 243 309 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 SMART rav1_2 244 313 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 SMART rav1_2 343 407 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 455 - -
Trre10g01934 542 ProSiteProfiles AP2/ERF domain profile. 343 401 IPR001471 GO:0003700|GO:0006355
Trre10g01934 542 ProSiteProfiles AP2/ERF domain profile. 244 307 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01934 Trre-Chr10 18357449 18362396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01934 87 542 AP2-EREBP Transcription Factor Family AT5G10510 53.030 1.01e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre10g01934 AP2 8.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01934 K09285 - gmx:100775390 575.089