Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01910 ATGGAAAATCATGACGATTCTGTTGAAGTGGATATTGAGTCCATAAGTTCCAGTGAACCTGATAGTGTTGATATTGAAATGGATGATGATGAGAGTGAATCAGGGTCTACTGCGGATGGCAAAGAATCATCTGATGAGGGAAATGTTGATGGAGATGCAGTTGCACGTCATAGTAAGGTAAGGTTTGATTCCATGACCGCCGATGATATTCGTTCTATGGAATTTTCTAATTTAAGTGAAGCTTATGACTTTTATTACCTCTATGGTAAATATTATGGTTTTCCTATTAGGAAAAGTGATAATAGGAGAAGCAAATGTAAAACAAAAATAACAATGAAGCAGTACGTATGCAACAAAGCTGGTTTAAGAGATACGAAACACTTAGTTAGGTTAGATAGGAAAATAGAACATAGACGTACGAGCCGTACTAATTGTCAAGCTAGGTTGCGTGTGAAATACCATGCTGCAAAGGGTAAATATGTAGTAGCAATTTTTGTAGAGGCTCACAACCATGAATTAACCCCAGCTAGGTTTGTTCACTTGCACCCATTGTTTCGCAATATTTCTGAGGCTGATAAGGCACAGATTGATGGTCTTCAGAGCCATGGTAAACAACCACAGGCAGTGATAACAGATGGAGATGGGGCAATGAGGGAAGCTATAAAACAGGTATTTCCTGATGCGACCCATAGAAAGGCAATGTACTCAAATTTTTCAAAAGATGAATTTGAAGAGTACTGGTCACAGATGATTAAAGCAACTGGAATGGAAGGAAATCCTTGGGTTCTCAAAACGTACAATAATAGGTCAATGTGGGCAACTGCATATCTACGTGATCAGTTTTTCGGACGCTTAAGAACGACTTCTCAATGTGAAGCGGTGAATGCAATTATCAAGACTTATGTGAGAAAGAAAGGATGCATTTTTGAATTTATGCACAACTATGATGAGGCACTTAGTTGTTATAGAAATAATGAATTGGCCGGCGAATTGATAGTTAAGGATAAAACTGAGGTCGAGGCTACGAAGATTTATAAGTTAACTAAATATTGTAGGGATGATTATGAAAGAAATGTTGTTTATAATGGTTCGACATTGGAATGTTCATGTAAGTTGTTTGATTCTCGTGGCATTCCATGTTCGCATGTATTTTATGTAATGAAAGAGGAACATGTTGATCATATTCCAAGCAATTTGGTTTTGTCGCGATGGACCAAGGATGCCAAAATTGATTATTTGAACACTGTGAATTGTAAAGATAATGTTGATTCGAGCATGGTTGAGCAAGCCCGTTTTGCATCATATTGTTCGGTTTTAACAGATTTTAGCAAAGAAGCTTCAAAAAAGGATGGTGTTTATGGACAAATAATGGAAGACCTGATGAAGTTAAAAATAAAGTATTGCAGTAAAGATGATCCTGCTATTGGGACACAGAAATCAGTAGTAGGTGATCCATTGCTGGCGAAGAATAAAGGTGCTCCGAAGAAGCCAAAAAAGAACGAAACTAAAACTGCCAGGCGGCGTTCAAACTGTAAAAACAAAACTGATGATGGGAGGAGATGTTCGGGTACACAACAAACCAAAGAACAATCGGGAGAAGCAAATGTTCATTTGGACTCCATGTCGATATCAGATTCTGTAAGCCTAATTGCTGAGAAAAAAAAGAGAAAAGCAAGTGGCAATGGTGAAACTAGTGTGCAGAACAATCGTTCACGTGGCGCTAATGTCGCAACAACACCACCTATTGATTTGACAACCACAAGCAGAAATTTCAATCCGATTTATGGACTTCAACCTGTGATGCCTATGTTAAATCCGATGATTCAACCGATGCATCTACCGCCCATATACCCAATGTATGGACTGCAACATGGAATGAGTGCTGGTCAAAATTCAAATTCTCACTATGGTCTGCTACAGCAAGTTATGGAAACTGCTAGGAATGATTGA 1950 0.3836 MENHDDSVEVDIESISSSEPDSVDIEMDDDESESGSTADGKESSDEGNVDGDAVARHSKVRFDSMTADDIRSMEFSNLSEAYDFYYLYGKYYGFPIRKSDNRRSKCKTKITMKQYVCNKAGLRDTKHLVRLDRKIEHRRTSRTNCQARLRVKYHAAKGKYVVAIFVEAHNHELTPARFVHLHPLFRNISEADKAQIDGLQSHGKQPQAVITDGDGAMREAIKQVFPDATHRKAMYSNFSKDEFEEYWSQMIKATGMEGNPWVLKTYNNRSMWATAYLRDQFFGRLRTTSQCEAVNAIIKTYVRKKGCIFEFMHNYDEALSCYRNNELAGELIVKDKTEVEATKIYKLTKYCRDDYERNVVYNGSTLECSCKLFDSRGIPCSHVFYVMKEEHVDHIPSNLVLSRWTKDAKIDYLNTVNCKDNVDSSMVEQARFASYCSVLTDFSKEASKKDGVYGQIMEDLMKLKIKYCSKDDPAIGTQKSVVGDPLLAKNKGAPKKPKKNETKTARRRSNCKNKTDDGRRCSGTQQTKEQSGEANVHLDSMSISDSVSLIAEKKKRKASGNGETSVQNNRSRGANVATTPPIDLTTTSRNFNPIYGLQPVMPMLNPMIQPMHLPPIYPMYGLQHGMSAGQNSNSHYGLLQQVMETARND 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01910 649 MobiDBLite consensus disorder prediction 485 539 - -
Trre10g01910 649 ProSiteProfiles Zinc finger SWIM-type profile. 355 391 IPR007527 GO:0008270
Trre10g01910 649 SMART 26again6 366 393 IPR006564 GO:0008270
Trre10g01910 649 MobiDBLite consensus disorder prediction 561 585 - -
Trre10g01910 649 MobiDBLite consensus disorder prediction 524 539 - -
Trre10g01910 649 MobiDBLite consensus disorder prediction 551 585 - -
Trre10g01910 649 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 449 IPR031052 GO:0006355
Trre10g01910 649 MobiDBLite consensus disorder prediction 1 55 - -
Trre10g01910 649 MobiDBLite consensus disorder prediction 34 55 - -
Trre10g01910 649 Pfam FAR1 DNA-binding domain 83 174 IPR004330 -
Trre10g01910 649 Pfam SWIM zinc finger 363 383 IPR007527 GO:0008270
Trre10g01910 649 MobiDBLite consensus disorder prediction 494 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01910 Trre-Chr10 18043574 18046353 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g01910 FAR1 3.6e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01910 - - tpra:123922786 549.666