Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01903 ATGGAAGATTCTAACGACTCCATTTTCGATTCAATCCTCTGTGATTCCACTTCCAGACTCATTCCTACTGGATTCACCGCAAGATATGAAAACGCAGAGGAGTGTGTCATGTTTGTAAATGCGGGAGGGGAAGCGTTTAATGAAGCAGCTGGTGGAGTTAAGTTTCTGGGTGACACTTTTTTTGACGGTGGCAATGTTTTTTGCACTAATGATCCGATAGTGGAAGGTGGAGATTACCCGTCTATATATCAATCAGCTCGGGTGGGAAGTTTTTGTTATAGAATTGATAACCTTTCTCCTGGGGACTATGTTGTTGACCTTCATTTTGTGGAGATTATTAATGTAAATGGGCCAAAAGGAATTAGGGTGTTCGACGTATACATACAAGAAGAAAAGGCTTTATCCGAATTGGATATCTATGCAGTTGTTGGAGTCAACAAGCCACTACAGATGATTGATTATAGGGTCACTGTGAAGGATGATGGGGTTTTAGTCATAAGATTCGAAAGTATAAATGGAAGCCCAGTTATTAGTGGGATTTGCATTAGGAGAGCGACGACAGTTTCACCAGTGACGAGTGATTTCATTAAATGTAACGACTGTGCTGCGCTGATTGAAATTCCTTCATCACAGATGAAAGATATGAAGACAAAATCTATAGTGAAGTATGAGAATAAGATAAAGGAGCTCACTGTGCAGTGTGAGGTCAAGGCAAAAGAATGCTATGAAGCGTGGATGTCATTAACTGAAACAAGTAGGAGAATGGAAATGATCCAGATGGAGCTTGATCAAGTGACATTTAAGTCACTCACTACTGAACAAACTCTGGAGAAACAAGCCGAGAACCTGAGGAGTATTTCTAACAGGTATGAACTTGATAAGAAGAAATGGGCAGAAGCAATTATTAGTTTACAGGAAAAAGTAAAGGTGATGAGGAGTGAACAATCTCGGCTTTCCCTTGAAGCACATGAGTGTGTCGATTCAATCCCTGAATTAAATAAGATGGTTTTTGCAGTTCAGGAATTGGTTAAGCAGTGTGAAGATCTCAAAGTGAAATACTATGAAGAGATGACACAGAGAAAGAAGCTCTTCAATGAAGTTCAAGAGGCTAAAGGGAACATTCGGGTTTTCTGCCGTTGTCGACCATTGAATAAGGGTGAAATGTCAGCTGGGTGTACAACAGTAGTGGATTTCGATGCATCAAAGGATGGATGCCTTGGAATTTTGACAACTGGCTCCACAAAAAAATTCAGATTTGACAGGGTTTATACACCAAAAGATGATCAAGTTGATGTTTTTGCTGATGCATCACCGATGGTAATCTCTGTGTTGGATGGCTACAACGTTTGCATCTTTGCTTACGGACAAACAGGAACAGGAAAAACATTTACCATGGAAGGAACCGAGCAGAATAGAGGAGTCAATTACAGGACTCTTGAGCACTTGTTTAGAGTTAGTAAGGAGAGGAGTGAAACTTTTTCATACGACATATCTGTTAGCGTGCTTGAGGTTTATAATGAACAAATAAGAGATTTATTGGCTACTGGACCTACATCAAAAAGGTTGGAGATAAAACAAAACTCTGAAGGCTATCATCATGTCCCTGGTGTTGTAGAAGCCAAGGTTGACAACATATGTGATGTGTGGAAAGTACTGCAGGCTGGAAGCAATGCTAGAGCAGTTGGAAGTAATAACGTTAATGAGCACAGCAGTCGATCTCATTGCATGCTATGTATAATGGTAAAGGCTAAAAATTTGATGAATGGCGAGTGTACCAAGAGCAAGCTTTGGCTTGTGGATTTGGCTGGTAGTGAGAGACTTGCAAAGACTGATGTGCAAGGGGAGCGACTTAAGGAAGCACAAAATATCAATCGATCTCTTTCTGCGCTTGGAGATGTGATATCCTCTTTAGCAGCCAAAAGTAGTCACATTCCATATAGGAACTCTAAATTGACGCATTTACTCCAAGACTCACTCGGAGGTGACTCAAAAACTTTAATGTTTGTACAAATAAGTCCATCAGACCAGGATGTAGGCGAGACTCTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAATTGATACTGGTGAACTTCAAAAGACAAAAGCAATGCTTGAGAAAGCACGGAGTGAGTGCAGAAGTAAAGATGAATCTATGAAAAAACTAGAAGAAAGTTTGCAAATCATTGAGAATAAGGCCAAAGGAAAGGATCATGTCCACAAAAATTTACAAGAAAAGATTAAAGAACTTGAAGGCCAGATTGAGCTCAAAACATCCACGCAAAATCAATCAGAGAAACAAATTTCTCAATTATATGAAAAGTTGAAGGGAAAAGAAGAAACCTGCTGTACTCTCCAACAAAAGGTCAAAGAGCTTGAGAAAAAAATAAAAGAACAGCTGCAGTCGGAGACTGCAAATTTCCAGCAGAAGGTTTGGGATCTAGAGAAAAAGCTGAAAGATCAGTTGCAAGGGTCTGAGTCTGAATCTTCCTTTTTAAAAGATAAGATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAGCAGAACTCAGAAAGCTTGCTTAAACAACAGATGAAGGAACTAGAGGAGAAATACAAAGAGCGAGAGCAACAGTGGAAGCAAACTCATTGTTATGTTGAAGCCGTAAAGATGACCGCCACACCTGACATAGCTAAAAGCCGCACAAGTGATGAATGTCCAAACGAGATTGAGACTCGCATTTTATGTAGTTCAAACTCGGTAAACCGCCAAATAAGTCAAGACTCTGTTTTGATAAAAGGGAATGATTCTACTCATCAGATGAGAAACAAAAGGCAGCTCAGAAGCAACGAAATTGAGAACCATTTTGTTATGCCATCGTCCTCTTTACGCGATAGAAAAATCACAAGGAAATCCGACCCACCACCTAAAATTGTAAGGACCGGTAAGATAACAACAAAACCGACTGCCGTTGCTAGTCAAGCTCCTTTGTCTCATAAGAGAGCTAGCACTAGCAGAGATCAGGCTCAAGGAGTTAAAGAGAGGGACAGTAAGAAGAAAATATGGTCAAGATAG 3084 0.4021 MEDSNDSIFDSILCDSTSRLIPTGFTARYENAEECVMFVNAGGEAFNEAAGGVKFLGDTFFDGGNVFCTNDPIVEGGDYPSIYQSARVGSFCYRIDNLSPGDYVVDLHFVEIINVNGPKGIRVFDVYIQEEKALSELDIYAVVGVNKPLQMIDYRVTVKDDGVLVIRFESINGSPVISGICIRRATTVSPVTSDFIKCNDCAALIEIPSSQMKDMKTKSIVKYENKIKELTVQCEVKAKECYEAWMSLTETSRRMEMIQMELDQVTFKSLTTEQTLEKQAENLRSISNRYELDKKKWAEAIISLQEKVKVMRSEQSRLSLEAHECVDSIPELNKMVFAVQELVKQCEDLKVKYYEEMTQRKKLFNEVQEAKGNIRVFCRCRPLNKGEMSAGCTTVVDFDASKDGCLGILTTGSTKKFRFDRVYTPKDDQVDVFADASPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQNRGVNYRTLEHLFRVSKERSETFSYDISVSVLEVYNEQIRDLLATGPTSKRLEIKQNSEGYHHVPGVVEAKVDNICDVWKVLQAGSNARAVGSNNVNEHSSRSHCMLCIMVKAKNLMNGECTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISSLAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKKQIDTGELQKTKAMLEKARSECRSKDESMKKLEESLQIIENKAKGKDHVHKNLQEKIKELEGQIELKTSTQNQSEKQISQLYEKLKGKEETCCTLQQKVKELEKKIKEQLQSETANFQQKVWDLEKKLKDQLQGSESESSFLKDKIKELERKLKEQEQNSESLLKQQMKELEEKYKEREQQWKQTHCYVEAVKMTATPDIAKSRTSDECPNEIETRILCSSNSVNRQISQDSVLIKGNDSTHQMRNKRQLRSNEIENHFVMPSSSLRDRKITRKSDPPPKIVRTGKITTKPTAVASQAPLSHKRASTSRDQAQGVKERDSKKKIWSR 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01903 1027 ProSitePatterns Kinesin motor domain signature. 594 605 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre10g01903 1027 MobiDBLite consensus disorder prediction 1009 1027 - -
Trre10g01903 1027 Pfam Kinesin motor domain 379 693 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 Gene3D - 31 187 - -
Trre10g01903 1027 Gene3D Kinesin motor domain 316 696 IPR036961 -
Trre10g01903 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 731 IPR027417 -
Trre10g01903 1027 Coils Coil 715 791 - -
Trre10g01903 1027 PRINTS Kinesin heavy chain signature 446 467 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 PRINTS Kinesin heavy chain signature 595 613 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 PRINTS Kinesin heavy chain signature 644 665 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 PRINTS Kinesin heavy chain signature 564 581 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 FunFam Kinesin-like protein KIN-14R 31 186 - -
Trre10g01903 1027 MobiDBLite consensus disorder prediction 989 1008 - -
Trre10g01903 1027 Coils Coil 807 827 - -
Trre10g01903 1027 SMART kinesin_4 371 702 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 ProSiteProfiles Kinesin motor domain profile. 373 694 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01903 1027 SUPERFAMILY Tropomyosin 708 882 - -
Trre10g01903 1027 PANTHER KINESIN-LIKE PROTEIN KLP-3 43 776 IPR027640 GO:0003777|GO:0007018
Trre10g01903 1027 Coils Coil 220 240 - -
Trre10g01903 1027 MobiDBLite consensus disorder prediction 967 1027 - -
Trre10g01903 1027 Coils Coil 832 885 - -
Trre10g01903 1027 FunFam kinesin-like protein KIN-14R 322 696 - -
Trre10g01903 1027 Pfam Malectin domain 37 180 IPR021720 -
Trre10g01903 1027 CDD KISc_C_terminal 371 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01903 Trre-Chr10 17998050 18003578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01903 345 747 Calmodulin-binding Proteins AT5G65930 41.463 3.50e-85 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01903 K10406 - gmx:100800016 1595.1