Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01901 ATGGATCCGATTCAACTCAACGATTTTCAAAATCACACACAAACCCTAATTTCAGACCTTCAAGATTCAGTTATGGAAGATTCTAACGACTCCATTTTCGATTCAATCCTCTGTGATTCCACTTCCAGACTCATTCCTACTGGATTCACCGCAAGATATGAAAACGCAGAGGAGTGTGTCATGTTTGTAAATGCGGGAGGGGAAGCGTTTAATGAAGCAGCTGGTGGAGTTAAGTTTCTGGGTGACACTTTTTTTGACGGTGGCAATGTTTTTTGCACTAATGATCCGATAGTGGAAGGTGGAGATTACCCGTCTATATATCAATCAGCTCGGGTGGGAAGTTTTTGTTATAGAATTGATAACCTTTCTCCTGGGGACTATGTTGTTGACCTTCATTTTGTGGAGATTATTAATGCTTTATCCGAATTGGATATCTATGCAGTTGTTGGAGTCAACAAGCCACTACAGATGATTGATTATAGGGTCACTGTGAAGGATGATGGGGTTTTAGTCATAAGATTCGAAAGTATAAATGGAAGCCCAGTTATTAGTGGGATTTGCATTAGGAGAGCGACGACAGTTTCACCAGTGACGAGTGATTTCATTAAATGTAACGACTGTGCTGCGCTGATTGAAATTCCTTCATCACAGATGAAAGATATGAAGACAAAATCTATAGTGAAGTATGAGAATAAGATAAAGGAGCTCACTGTGCAGTGTGAGGTCAAGGCAAAAGAATGCTATGAAGCGTGGATGTCATTAACTGAAACAAGTAGGAGAATGGAAATGATCCAGATGGAGCTTGATCAAGTGACATTTAAGTCACTCACTACTGAACAAACTCTGGAGAAACAAGCCGAGAACCTGAGGAGTATTTCTAACAGGTATGAACTTGATAAGAAGAAATGGGCAGAAGCAATTATTAGTTTACAGGAAAAAGTAAAGGTGATGAGGAGTGAACAATCTCGGCTTTCCCTTGAAGCACATGAGTGTGTCGATTCAATCCCTGAATTAAATAAGATGGTTTTTGCAGTTCAGGAATTGGTTAAGCAGTGTGAAGATCTCAAAGTGAAATACTATGAAGAGATGACACAGAGAAAGAAGCTCTTCAATGAAGTTCAAGAGGCTAAAGGGAACATTCGGGTTTTCTGCCGTTGTCGACCATTGAATAAGGGTGAAATGTCAGCTGGGTGTACAACAGTAGTGGATTTCGATGCATCAAAGGATGGATGCCTTGGAATTTTGACAACTGGCTCCACAAAAAAATTCAGATTTGACAGGGTTTATACACCAAAAGATGATCAAGTTGATGTTTTTGCTGATGCATCACCGATGGTAATCTCTGTGTTGGATGGCTACAACGTTTGCATCTTTGCTTACGGACAAACAGGAACAGGAAAAACATTTACCATGGAAGGAACCGAGCAGAATAGAGGAGTCAATTACAGGACTCTTGAGCACTTGTTTAGAGTTAGTAAGGAGAGGAGTGAAACTTTTTCATACGACATATCTGTTAGCGTGCTTGAGGTTTATAATGAACAAATAAGAGATTTATTGGCTACTGGACCTACATCAAAAAGGTTGGAGATAAAACAAAACTCTGAAGGCTATCATCATGTCCCTGGTGTTGTAGAAGCCAAGGTTGACAACATATGTGATGTGTGGAAAGTACTGCAGGCTGGAAGCAATGCTAGAGCAGTTGGAAGTAATAACGTTAATGAGCACAGCAGTCGATCTCATTGCATGCTATGTATAATGGTAAAGGCTAAAAATTTGATGAATGGCGAGTGTACCAAGAGCAAGCTTTGGCTTGTGGATTTGGCTGGTAGTGAGAGACTTGCAAAGACTGATGTGCAAGGGGAGCGACTTAAGGAAGCACAAAATATCAATCGATCTCTTTCTGCGCTTGGAGATGTGATATCCTCTTTAGCAGCCAAAAGTAGTCACATTCCATATAGGAACTCTAAATTGACGCATTTACTCCAAGACTCACTCGGAGGTGACTCAAAAACTTTAATGTTTGTACAAATAAGTCCATCAGACCAGGATGTAGGCGAGACTCTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAATTGATACTGGTGAACTTCAAAAGACAAAAGCAATGCTTGAGAAAGCACGGAGTGAGTGCAGAAGTAAAGATGAATCTATGAAAAAACTAGAAGAAAGTTTGCAAATCATTGAGAATAAGGCCAAAGGAAAGGATCATGTCCACAAAAATTTACAAGAAAAGATTAAAGAACTTGAAGGCCAGATTGAGCTCAAAACATCCACGCAAAATCAATCAGAGAAACAAATTTCTCAATTATATGAAAAGTTGAAGGGAAAAGAAGAAACCTGCTGTACTCTCCAACAAAAGGTCAAAGAGCTTGAGAAAAAAATAAAAGAACAGCTGCAGTCGGAGACTGCAAATTTCCAGCAGAAGGTTTGGGATCTAGAGAAAAAGCTGAAAGATCAGTTGCAAGGGTCTGAGTCTGAATCTTCCTTTTTAAAAGATAAGATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAGCAGAACTCAGAAAGCTTGCTTAAACAACAGATGAAGGAACTAGAGGAGAAATACAAAGAGCGAGAGCAACAGTGGAAGCAAACTCATTGTTATGTTGAAGCCGTAAAGATGACCGCCACACCTGACATAGCTAAAAGCCGCACAAGTGATGAATGTCCAAACGAGATTGAGACTCGCATTTTATGTAGTTCAAACTCGGTAAACCGCCAAATAAGTCAAGACTCTGTTTTGATAAAAGGGAATGATTCTACTCATCAGATGAGAAACAAAAGGCAGCTCAGAAGCAACGAAATTGAGAACCATTTTGTTATGCCATCGTCCTCTTTACGCGATAGAAAAATCACAAGGAAATCCGACCCACCACCTAAAATTGTAAGGACCGGTAAGATAACAACAAAACCGACTGCCGTTGCTAGTCAAGCTCCTTTGTCTCATAAGAGAGCTAGCACTAGCAGAGATCAGGCTCAAGGAGTTAAAGAGAGGGACAGTAAGAAGAAAATATGGTCAAGATAG 3102 0.4014 MDPIQLNDFQNHTQTLISDLQDSVMEDSNDSIFDSILCDSTSRLIPTGFTARYENAEECVMFVNAGGEAFNEAAGGVKFLGDTFFDGGNVFCTNDPIVEGGDYPSIYQSARVGSFCYRIDNLSPGDYVVDLHFVEIINALSELDIYAVVGVNKPLQMIDYRVTVKDDGVLVIRFESINGSPVISGICIRRATTVSPVTSDFIKCNDCAALIEIPSSQMKDMKTKSIVKYENKIKELTVQCEVKAKECYEAWMSLTETSRRMEMIQMELDQVTFKSLTTEQTLEKQAENLRSISNRYELDKKKWAEAIISLQEKVKVMRSEQSRLSLEAHECVDSIPELNKMVFAVQELVKQCEDLKVKYYEEMTQRKKLFNEVQEAKGNIRVFCRCRPLNKGEMSAGCTTVVDFDASKDGCLGILTTGSTKKFRFDRVYTPKDDQVDVFADASPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQNRGVNYRTLEHLFRVSKERSETFSYDISVSVLEVYNEQIRDLLATGPTSKRLEIKQNSEGYHHVPGVVEAKVDNICDVWKVLQAGSNARAVGSNNVNEHSSRSHCMLCIMVKAKNLMNGECTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISSLAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKKQIDTGELQKTKAMLEKARSECRSKDESMKKLEESLQIIENKAKGKDHVHKNLQEKIKELEGQIELKTSTQNQSEKQISQLYEKLKGKEETCCTLQQKVKELEKKIKEQLQSETANFQQKVWDLEKKLKDQLQGSESESSFLKDKIKELERKLKEQEQNSESLLKQQMKELEEKYKEREQQWKQTHCYVEAVKMTATPDIAKSRTSDECPNEIETRILCSSNSVNRQISQDSVLIKGNDSTHQMRNKRQLRSNEIENHFVMPSSSLRDRKITRKSDPPPKIVRTGKITTKPTAVASQAPLSHKRASTSRDQAQGVKERDSKKKIWSR 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01901 1033 Coils Coil 813 833 - -
Trre10g01901 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 737 IPR027417 -
Trre10g01901 1033 SMART kinesin_4 377 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01901 1033 Gene3D - 55 193 - -
Trre10g01901 1033 MobiDBLite consensus disorder prediction 973 1033 - -
Trre10g01901 1033 Coils Coil 226 246 - -
Trre10g01901 1033 Coils Coil 838 891 - -
Trre10g01901 1033 Gene3D Kinesin motor domain 322 702 IPR036961 -
Trre10g01901 1033 CDD KISc_C_terminal 377 702 - -
Trre10g01901 1033 ProSitePatterns Kinesin motor domain signature. 600 611 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre10g01901 1033 Pfam Malectin domain 61 138 IPR021720 -
Trre10g01901 1033 MobiDBLite consensus disorder prediction 1015 1033 - -
Trre10g01901 1033 Pfam Kinesin motor domain 385 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01901 1033 PRINTS Kinesin heavy chain signature 650 671 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01901 1033 PRINTS Kinesin heavy chain signature 570 587 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01901 1033 PRINTS Kinesin heavy chain signature 601 619 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01901 1033 PRINTS Kinesin heavy chain signature 452 473 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre10g01901 1033 SUPERFAMILY Tropomyosin 714 888 - -
Trre10g01901 1033 Coils Coil 721 797 - -
Trre10g01901 1033 PANTHER KINESIN-LIKE PROTEIN KLP-3 66 782 IPR027640 GO:0003777|GO:0007018
Trre10g01901 1033 FunFam kinesin-like protein KIN-14R 328 702 - -
Trre10g01901 1033 MobiDBLite consensus disorder prediction 995 1014 - -
Trre10g01901 1033 ProSiteProfiles Kinesin motor domain profile. 379 700 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01901 Trre-Chr10 17998050 18003650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01901 351 753 Calmodulin-binding Proteins AT5G65930 41.463 4.45e-85 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01901 K10406 - gmx:100800016 1577.38