Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01897 ATGACATACACTTTATCAAATGAAAAGGAAGTACTTGCTTTTGGGTGGGCTGCTAGAGATTCCTCAGGAATTCTGTCCCCCTATCACTTCTCTAGAAGGGAAAATGGAAATCTTGACATCACCATGAAGATACTCTATTGTGGGATATGCCATGGAGATGTTCATTTTGCCAAGAATGAGCTAGGTCGTCATAACAACTATCCAATGGTTCCCGGACATGAGATAGTGGGTGAAGTAATAAAGATTGGTCCAAGTGTCAAAAAATTCAAAATTGGGGACATAGCAGGAGTGGGTCCAATATGTGGTTCATGTGGTACATGTTCAGGTTGCACCAATAGTTGGGAGAATGTTTGCCCCAAAAGAATTTTAACATACAATTCACAAGACTATGATGGATCAATAACCTATGGTGGATACTCAAATAAAATAGTTGTTAATGAACATTTTGCTATTATAATGCCAAAAGGGTTACCATTAGAAGGTGCAGCTCCATTGTTATGTGCTGGATTAACAGTTTATAGCCCAATGATGCATCATGGATTGTATCAAAGTGGACAACATTTGGGTGTTGTTGGATTAGGTGGACTTGGTCATGTTGCAGTTAAGTTTGCTAAGGCTTTTAACATGAAAGTTACAGTGATAAGTACTTCTCCTGGAAAGAAAGAGGAAGCTTTGGAGAGACTTGGTGCTGATTCCTTCTTGCTTATCAATGATCAACAACAATTGGAGGAAGCAAAGGACACAATGGATGGCATCATAGACACCGCTTCAGGCCCTCACTCACTGCACCCATTAATTGATATGTTGAAGATATGTGGAAAATTGATTTTAGTAGGTGCATCAATTACACCTCCTGTCTTGCCATATATGCCATTGATGCTTGGGAGGAAGGTAATTGCTGGTAGTGCTGCTGGAGGAATGAAAGAGAGCCAAGACATGATTAATTTTGCAGCAAAGCACAATATCACAGCGGATATTGAAGTGATTCCAATGGATTATGTGAACACTGCTTTTGAGAGACTTGCAAAGAATGATGTTAAATACAGATTTGTCATTGATGTGGCTAACACTCTTAATGTCTCTCATATTGATTAA 1095 0.3918 MTYTLSNEKEVLAFGWAARDSSGILSPYHFSRRENGNLDITMKILYCGICHGDVHFAKNELGRHNNYPMVPGHEIVGEVIKIGPSVKKFKIGDIAGVGPICGSCGTCSGCTNSWENVCPKRILTYNSQDYDGSITYGGYSNKIVVNEHFAIIMPKGLPLEGAAPLLCAGLTVYSPMMHHGLYQSGQHLGVVGLGGLGHVAVKFAKAFNMKVTVISTSPGKKEEALERLGADSFLLINDQQQLEEAKDTMDGIIDTASGPHSLHPLIDMLKICGKLILVGASITPPVLPYMPLMLGRKVIAGSAAGGMKESQDMINFAAKHNITADIEVIPMDYVNTAFERLAKNDVKYRFVIDVANTLNVSHID 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01897 364 FunFam Cinnamyl alcohol dehydrogenase 168 324 - -
Trre10g01897 364 Pfam Zinc-binding dehydrogenase 195 317 IPR013149 -
Trre10g01897 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 322 IPR036291 -
Trre10g01897 364 SMART PKS_ER_names_mod 23 352 IPR020843 GO:0016491
Trre10g01897 364 Gene3D - 168 324 - -
Trre10g01897 364 Pfam Alcohol dehydrogenase GroES-like domain 39 151 IPR013154 -
Trre10g01897 364 CDD CAD1 14 353 IPR047109 GO:0016616
Trre10g01897 364 Gene3D - 16 354 - -
Trre10g01897 364 PANTHER ALDEHYDE REDUCTASE 8 357 IPR047109 GO:0016616
Trre10g01897 364 FunFam Putative cinnamyl alcohol dehydrogenase 6 325 354 - -
Trre10g01897 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Trre10g01897 364 SUPERFAMILY GroES-like 21 186 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01897 Trre-Chr10 17944654 17948745 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01897 13 358 Monolignol Biosynthesis Gene Families AT2G21890 57.349 7.29e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01897 K23232 - fve:101301572 495.738