Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g01892 | ATGGTTTCGGACGAGCACTTTGTGTTTCGTATTCCAGATGAGCTACCTCTTGATGCCGCCGCACCTCTGCTCTGCGCTGGTATAACGGTATATAGTCCTCTTAGATATTTTGGACTCGACAAGCCTGGTTTGCATATTGATGTTGTTGGTCTTGGTGGGCTTGGCCATATGGCTGTGAAATTTACCAAAGCCTTTGGTGCTAATGTTACGGTAATCAGTACATCACCTAGCAAAGAAAAGGAAGCAATAGAAAACTTGGGTGCCGATTCATTTTTAATAAGTCGCGACCAAGATCAAATGAAGGCTGCAATGGGTACTTTGGATGGTATTATCGACACAGTTTCAGCAGATCATCCTTTATTACTTTTAATCGGTTTACTTAAGTCTCATGGAAAGCTTGTAATGGTTGGTGCACCTGAAAAGCCTCTAGAGCTTCCAGTTTTTCCTTTACTTGCAGGTAGAAAGATAGTAGCTGGAAGTTTAATTGGAGGGATAAAGGAGACTCAAGAAATGATTGATTTTGCAGCAAAGCATAATGTAAAGCTTGATATTGAGATCATTCCTATTGATTATGTCAATACAGCAATGGAGCGTCTTCTTAAAGCAGATGTGAAATATCGATTTGTGATTGATATTGGAAACACATTAAAACCAAGCTATTGA | 663 | 0.3982 | MVSDEHFVFRIPDELPLDAAAPLLCAGITVYSPLRYFGLDKPGLHIDVVGLGGLGHMAVKFTKAFGANVTVISTSPSKEKEAIENLGADSFLISRDQDQMKAAMGTLDGIIDTVSADHPLLLLIGLLKSHGKLVMVGAPEKPLELPVFPLLAGRKIVAGSLIGGIKETQEMIDFAAKHNVKLDIEIIPIDYVNTAMERLLKADVKYRFVIDIGNTLKPSY | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g01892 | 220 | PANTHER | ALDEHYDE REDUCTASE | 1 | 215 | IPR047109 | GO:0016616 | |
| Trre10g01892 | 220 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 15 | 181 | IPR036291 | - | |
| Trre10g01892 | 220 | Gene3D | - | 1 | 207 | - | - | |
| Trre10g01892 | 220 | FunFam | Putative cinnamyl alcohol dehydrogenase 6 | 183 | 212 | - | - | |
| Trre10g01892 | 220 | FunFam | Cinnamyl alcohol dehydrogenase | 26 | 182 | - | - | |
| Trre10g01892 | 220 | CDD | CAD1 | 1 | 211 | IPR047109 | GO:0016616 | |
| Trre10g01892 | 220 | Gene3D | - | 25 | 161 | - | - | |
| Trre10g01892 | 220 | Pfam | Zinc-binding dehydrogenase | 53 | 176 | IPR013149 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g01892 | Trre-Chr10 | 17916568 | 17917637 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre10g01892 | 1 | 219 | Monolignol Biosynthesis Gene Families | AT4G37990 | 74.886 | 1.10e-100 | 294 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g01892 | K23232 | - | gmx:100816901 | 375.17 |