Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01891 ATGGCATCAGTAGTTGAGCATCCTAAGAAGGCCTTTGGATGGGCAGCTAGAGATCCTACTGGCGTTCTCTCCCCTTTCAATTTCTCAAGAAGGAAAACCGGTGAGAAAGATGTAGCATTCAAGGTGTTGTATTGTGGGATATGTCACACTGACCTTCATATGATACAGAATGAATGGGGCAATTCAATCTATCCGTTAGTTCCAGGGCATGAACTTGTGGGTGTAGTAACAGAGGTGGGAAGCAAGGTAGAAAAGTTTAAAGTTGGAGACAAAGTAGGTGTGGGATACGTTGTTGATTCATGTAGGTCGTGCGAAAATTGTGACGAAAATCTTGAGAATTATTGTCCCAAAAATACACTCACATGTAATGCCAAGCATCGCGATGGCACTGTTACATACGGAGGTTACTCTGACTCAATGGTTGCAGATGAGCACTTTGTGATCCGCATTCCTGATAACTTACCTCTTGATGTTGTTGGTCCTCTCCTTTGTGCCGGTGTTACAGTGTATAGTCCCCTTAGGCATTTTGGACTCGACAAGCCTGGTATGAACATAGGCGTTGTCGGTCTTGGTGGACTCGGTCATATGGCTGTTAAATTTGCCAAAGCGTTGGGTGCTAAGGTAACAGTCATTAGTACATCGCCGAGCAAAGAAAAGGAAGCAATTGAACACTTAGGAGCTGACTCGTTTCTAATAAGTCGCGATCCAGATCAGATGCAGGCCGCAAAAGGTACTTTGAACGGTATTATTGACACAGTTTCGGCGAGTCATCCTATCTTACAACTGATTGGTTTATTGAAAACCAATGGAAAGCTTGTAATGGTTGGTGGGGTAGCAAAGCCCCTAGAGCTTCCTGCATTTGCTTTACTTGGAGGGAGAAAGTTGGTTGCCGGAAGTTTAGTCGGAGGGATAAAAGAAACTCAAGAAATGATTGATTTTGCAGCAGAACATAATGTAAAGCCTGAGATTGAGGTCGTTCCTATTGATTACATCAACACAGCAATGGAGCGTCTTGCTAAATCAGACGTGAAATATCGTTTTGTGATTGATATTGGAAACTCGCTGAAAGAAAGCTCTTAA 1080 0.4324 MASVVEHPKKAFGWAARDPTGVLSPFNFSRRKTGEKDVAFKVLYCGICHTDLHMIQNEWGNSIYPLVPGHELVGVVTEVGSKVEKFKVGDKVGVGYVVDSCRSCENCDENLENYCPKNTLTCNAKHRDGTVTYGGYSDSMVADEHFVIRIPDNLPLDVVGPLLCAGVTVYSPLRHFGLDKPGMNIGVVGLGGLGHMAVKFAKALGAKVTVISTSPSKEKEAIEHLGADSFLISRDPDQMQAAKGTLNGIIDTVSASHPILQLIGLLKTNGKLVMVGGVAKPLELPAFALLGGRKLVAGSLVGGIKETQEMIDFAAEHNVKPEIEVVPIDYINTAMERLAKSDVKYRFVIDIGNSLKESS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01891 359 FunFam Uncharacterized protein 14 164 - -
Trre10g01891 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre10g01891 359 Gene3D - 14 351 - -
Trre10g01891 359 Pfam Alcohol dehydrogenase GroES-like domain 36 149 IPR013154 -
Trre10g01891 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 320 IPR036291 -
Trre10g01891 359 CDD CAD1 12 350 IPR047109 GO:0016616
Trre10g01891 359 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
Trre10g01891 359 PANTHER ALDEHYDE REDUCTASE 6 354 IPR047109 GO:0016616
Trre10g01891 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 322 351 - -
Trre10g01891 359 FunFam Cinnamyl alcohol dehydrogenase 165 321 - -
Trre10g01891 359 SUPERFAMILY GroES-like 17 182 IPR011032 -
Trre10g01891 359 Gene3D - 165 321 - -
Trre10g01891 359 Pfam Zinc-binding dehydrogenase 192 315 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01891 Trre-Chr10 17903320 17905114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01891 9 356 Monolignol Biosynthesis Gene Families AT4G37990 68.391 1.20e-166 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01891 K23232 - gmx:100816901 579.326