Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01890 ATGCAGCTGGCCATCAATCCACCTTCTGATCAAGGCGATGAAGATGATGTTCGTACTTTGAACGGTATTATTGACACCGTTTCGGCGAGTCATCCTATCTTGCAACTGATTGGTTTGTTGAAAACCAATGGAAAGCTTGTAATGGTTGGTGGGGTTGCAAAGCCTCTAGAGCTTCCTGCATTTGCTTTACTTGGAGGGAGAAAGTTGGTTGCCGGAAGTTTAGTCGGACGGATAAAAGAAACTCAAGAAATGATTGATTTTGCAGCAGAACATAATGTAAAGCCGGAGATTGAGGTCGTTCCTATTGATTACATCAACACGGCAATGGAGCGTCTTGCTAAATCAAACGTGAAATATCGTTTTGTGATTGATATTGGAAACTCGCTGAAAGAAAGCTCTTAA 402 0.4204 MQLAINPPSDQGDEDDVRTLNGIIDTVSASHPILQLIGLLKTNGKLVMVGGVAKPLELPAFALLGGRKLVAGSLVGRIKETQEMIDFAAEHNVKPEIEVVPIDYINTAMERLAKSNVKYRFVIDIGNSLKESS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01890 133 PANTHER ALDEHYDE REDUCTASE 16 128 IPR047109 GO:0016616
Trre10g01890 133 FunFam Putative cinnamyl alcohol dehydrogenase 6 96 125 - -
Trre10g01890 133 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 94 IPR036291 -
Trre10g01890 133 Gene3D - 15 95 - -
Trre10g01890 133 Pfam Zinc-binding dehydrogenase 18 116 - -
Trre10g01890 133 Gene3D - 96 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01890 Trre-Chr10 17899602 17900762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01890 14 130 Monolignol Biosynthesis Gene Families AT4G37990 60.684 9.45e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01890 K23232 - gmx:100816901 176.022