Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01882 ATGGCATCAGAAGGTAAAATAGTAGAGCATACTAAAAAGGCCTTTGGATGGGCAGCTAGAGATCCTACTGGTGTTCTTTCCCCTTTCAATTTCTTCAGAAGGGAAACAGGTGAGAAAGATGTAGCATTCAAGGTGTTGTATTGTGGGATATGCCACTCTGATCTTCATATGTCAAAGAATGAATGGTTCAATACCTTCTATCCATTTGTTCCTGGGCATGAGCTTGTGGGTGTAGTAACAGAGGTGGGAAGCAAAGTAGAAAAATTCAAAGTTGGAGACAAAGTAGGTGTGGGCTACGTGATTGATTCATGTCGGTCGTGTCAAAATTGCGACGACAATCTTGAGAATTACTGCCCAAAATATACCGTCACATGTGGTGCCAAGTATCGCGATGGCACCATCACATATGGAGGTTACTCTGACTCAATGGTTGCGGAGGAGCATTTTGTTATCTGCATTCCTGATAACTTACCTCTTGATGTTGCCGGTCCTCTCCTATGCGCCGGTGTCACAGTATATAGTCCTCTTAAATATTTTGGACTCGACAAGCCCGGGCTTCATATAGGTGTTGTTGGTCTTGGCGGACTTGGTCATATGGCTGTTAAATTTGCCAAAGCTTTTGGTGCTCGTGTCACGGTAATTAGTACATCGCCTAACAAAGAAGCGGAAGCATTAGACCACTTAGGAGCTGACGCGTTTATAATAAGTCGCGACCCGAATCAAATGCAGGCTGCAATTGGTACTATGGATGGTATTATCGACACAGTTTCAGCTGGTCATCCTCTTTTACCAATAATTGGGAGGAAATTAATTGCTGGGAGTACGGTTGGAGGGATTAAGGAGACTCAAGAAATGATTGATTTTGCTGCTAAACACGGCGTTAAACCTGATATCGAGATTGTTCCTATTGATTATGTCAACACAGCATTGGAGCGTCTCGCTAAAGCAGACGTGAAATATCGTTTTGTGATTGATATTGGAAACACATTGAAAGAAAGTTCTTAA 1005 0.4269 MASEGKIVEHTKKAFGWAARDPTGVLSPFNFFRRETGEKDVAFKVLYCGICHSDLHMSKNEWFNTFYPFVPGHELVGVVTEVGSKVEKFKVGDKVGVGYVIDSCRSCQNCDDNLENYCPKYTVTCGAKYRDGTITYGGYSDSMVAEEHFVICIPDNLPLDVAGPLLCAGVTVYSPLKYFGLDKPGLHIGVVGLGGLGHMAVKFAKAFGARVTVISTSPNKEAEALDHLGADAFIISRDPNQMQAAIGTMDGIIDTVSAGHPLLPIIGRKLIAGSTVGGIKETQEMIDFAAKHGVKPDIEIVPIDYVNTALERLAKADVKYRFVIDIGNTLKESS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01882 334 Gene3D - 11 172 - -
Trre10g01882 334 Gene3D - 266 331 - -
Trre10g01882 334 SMART PKS_ER_names_mod 24 324 IPR020843 GO:0016491
Trre10g01882 334 Gene3D - 173 265 - -
Trre10g01882 334 Pfam Zinc-binding dehydrogenase 195 259 IPR013149 -
Trre10g01882 334 FunFam Uncharacterized protein 17 167 - -
Trre10g01882 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 295 IPR036291 -
Trre10g01882 334 Pfam Alcohol dehydrogenase GroES-like domain 39 151 IPR013154 -
Trre10g01882 334 FunFam Putative cinnamyl alcohol dehydrogenase 6 297 326 - -
Trre10g01882 334 SUPERFAMILY GroES-like 20 185 IPR011032 -
Trre10g01882 334 PANTHER ALDEHYDE REDUCTASE 9 266 IPR047109 GO:0016616
Trre10g01882 334 CDD CAD1 15 325 IPR047109 GO:0016616
Trre10g01882 334 FunFam Cinnamyl alcohol dehydrogenase 168 267 - -
Trre10g01882 334 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01882 Trre-Chr10 17776909 17779761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01882 5 331 Monolignol Biosynthesis Gene Families AT4G37990 64.507 1.25e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01882 K23232 - gmx:100816901 530.791