Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01881 ATGGCAACAACACAACCTGAATTTGAACATCCTAATAAGGCCTTTGGTTTGGCTGCTAGAGACTCTTCTGGTCTTCTCTCCCCTTTCAATTTCTCTAGAAGGGAAACCGGTGAAAACGATGTTGCATTTAAAGTATTATATTGTGGGATATGTCACTCTGATCTCCACATGGTGAAAAATGAATGGGGAATGTCAACCTATCCATTAGTTCCTGGACATGAGATTGCTGGTATAGTGACTGAGGTGGGAAGCAAGGTACAAAAGTTCAAAGTTGGAGACAGAGTGGGTGTAGGCTGCATGGTTGATTCGTGTCGCACGTGTCAAAATTGCGAAGACGATCTTGAGAATTATTGTCCTCAATATACACTCACATATGGTGCAAAACATAGTGATGGCACAATCACATATGGCGGCTACTCTGACTCAATGGTTGCGGACGAGCATTTTGTGGTTCGCATTCCTGATGGCTTACCACTTGAAGCTGCTGCTCCTTTGCTTTGTGCTGGTATCACAGTATATAGTCCTCTTAAATATTTTGGACTCGACAAGCCCGGGCTTCATGTAGGTGTTGTTGGGCTTGGCGGACTTGGTCATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCTAATGTCACAGTAATTAGCACATCACCTAACAAAGAAAAGGAAGCAATAGAACACCTAGGAGCTGATACATTTCTGATAAGTCGCGACCAAGATAAGATGCAGGCTGCAATAAGTACTTTGGATGGTATCATCGATACAGTTTCGGCGGTTCATCCTCTCTTACCTCTAATTGGATTGCTGAAGTCTAATGGAAAGCTTGTAATGGTCGGTGCACCCGAGAAACCTCTGGAGCTCCCTCTCTTTCCTTTAATTATGGGGAGAAAGTTGATTGCTGGAAGCGGAATTGGAGGGATGAAAGAAACTCAAGAGATGATTGATTTTGCTGCTAAACACAACGTAAAACCTGACATTGAAATCATTCCTGTGGATTATGTTAACACTGCAATGGAGCGACTCGTCAAAGCAGATGTTAAATATCGATTTGTTATTGACATTGGAAACACTCTTAAAACAAGCTCTTAA 1089 0.4252 MATTQPEFEHPNKAFGLAARDSSGLLSPFNFSRRETGENDVAFKVLYCGICHSDLHMVKNEWGMSTYPLVPGHEIAGIVTEVGSKVQKFKVGDRVGVGCMVDSCRTCQNCEDDLENYCPQYTLTYGAKHSDGTITYGGYSDSMVADEHFVVRIPDGLPLEAAAPLLCAGITVYSPLKYFGLDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADTFLISRDQDKMQAAISTLDGIIDTVSAVHPLLPLIGLLKSNGKLVMVGAPEKPLELPLFPLIMGRKLIAGSGIGGMKETQEMIDFAAKHNVKPDIEIIPVDYVNTAMERLVKADVKYRFVIDIGNTLKTSS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01881 362 Gene3D - 168 324 - -
Trre10g01881 362 Gene3D - 18 354 - -
Trre10g01881 362 SUPERFAMILY GroES-like 22 185 IPR011032 -
Trre10g01881 362 CDD CAD1 15 353 IPR047109 GO:0016616
Trre10g01881 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 323 IPR036291 -
Trre10g01881 362 FunFam Putative cinnamyl alcohol dehydrogenase 6 325 354 - -
Trre10g01881 362 SMART PKS_ER_names_mod 24 352 IPR020843 GO:0016491
Trre10g01881 362 Pfam Zinc-binding dehydrogenase 195 318 IPR013149 -
Trre10g01881 362 FunFam Uncharacterized protein 17 167 - -
Trre10g01881 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Trre10g01881 362 PANTHER ALDEHYDE REDUCTASE 6 357 IPR047109 GO:0016616
Trre10g01881 362 FunFam Cinnamyl alcohol dehydrogenase 168 324 - -
Trre10g01881 362 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01881 Trre-Chr10 17773775 17775996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01881 12 359 Monolignol Biosynthesis Gene Families AT4G37990 72.701 9.86e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01881 K23232 - gmx:100816901 603.594