Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01880 ATGGCTTCACAACATGAGACAGAGCATCCCAAACAAGCTTTCGGATGGGCAGCTAGGGACACATCTGGAGTCCTTTCTCCTTTCAAATTCTCTAGAAGAGAAACAGGCGAGAAAGATGTGGCATTCAAAGTATTATATTGCGGTATATGTCACTCAGATCTCCACATGGTGAAGAATGAGTGGGGCAATAGTATATATCCACTTGTTCCAGGACATGAAGTGGCTGGTGAAGTGACTGAGGTAGGAAGCAAGGTAACAAAGTTCAAAGTTGGAGACAGAGTAGGTGTAGGGTGCATGGTTGGATCTTGCCACTCATGTCAAAGTTGCGGTGATGATCTCGAGAATTATTGTCCGAAGATGATTCTCACATATAGCGCAAAAAATATTGACGGAACAATCACATATGGAGGCTACTCTGATACAATGGTTTGCGAAGAACTCTTCGTGATCCGTATTCCTGATGCCTTATCACTTGAGGCCGCTGCTCCTCTTCTTTGTGCCGGGATCACAGTGTATAGCCCTTTGAAATACTTTGGACTCGACAAACCTGGTTTGCGTCTAGGTGTGGTTGGTCTCGGTGGATTAGGTCATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCGAATGTAACCGTGATAAGCACTTCTCCTAACAAAAAGAAGGAAGCCATTGAACACTTAGGAGCTGACTCATTCGTGGTTAGCTGCGAACAAGATCAGATGCAGGCTTTAATGGGGACTTTTGATGGTATCATTGACACTGTTTCAGCACAACATCCACTAGTCCCTTTGCTTGGTCTTGTGAAGAATCATGGTAAATTTGTTATGGTTGGAGCACCAGAGAAGCCTTTGGAGGTTCCAGCATTTTCTATAATTGGAGGGAGAAAAACAATTAGTGGGAGTATGATTGGGGGAATAAAGGAGACACAAGAAATGATTGATTTTGCTGCCAAACATGGTGTTAAACCTGATATTGAAATTGTCCCAGTGGATTATGTGAATACTGCAATGGAGCGTTTACTCAAATCTGATGTCAAATATCGATTTGTTATTGACATTGGAAAGACATTGAAGGCAAGTTCTTAA 1086 0.4273 MASQHETEHPKQAFGWAARDTSGVLSPFKFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGNSIYPLVPGHEVAGEVTEVGSKVTKFKVGDRVGVGCMVGSCHSCQSCGDDLENYCPKMILTYSAKNIDGTITYGGYSDTMVCEELFVIRIPDALSLEAAAPLLCAGITVYSPLKYFGLDKPGLRLGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKKKEAIEHLGADSFVVSCEQDQMQALMGTFDGIIDTVSAQHPLVPLLGLVKNHGKFVMVGAPEKPLEVPAFSIIGGRKTISGSMIGGIKETQEMIDFAAKHGVKPDIEIVPVDYVNTAMERLLKSDVKYRFVIDIGKTLKASS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01880 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Trre10g01880 361 Gene3D - 16 353 - -
Trre10g01880 361 CDD CAD1 14 352 IPR047109 GO:0016616
Trre10g01880 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Trre10g01880 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Trre10g01880 361 FunFam Uncharacterized protein 16 166 - -
Trre10g01880 361 SUPERFAMILY GroES-like 20 184 IPR011032 -
Trre10g01880 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Trre10g01880 361 Gene3D - 167 323 - -
Trre10g01880 361 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0016616
Trre10g01880 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Trre10g01880 361 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Trre10g01880 361 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01880 Trre-Chr10 17754035 17756011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01880 11 360 Monolignol Biosynthesis Gene Families AT4G37990 71.429 1.00e-169 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01880 K23232 - mtr:11405462 636.721