Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01879 ATGAAGATGGGACGTTGCATGTTTAAAAGGTTTCAATTGTTTTTGTGGTTTAGAATGGCTTTGCAACTTTGTTTCATGTTTGGTGCCTATTCTGAGCATATATCATTCAGAAGAAGCTTAAGTAATGCTCAATCTCCGGTCACTCTTTTGAATAATCCAAATCAAAATCAAAATTCTCCACAGGTTGTGATTAGCAATGGCATCTTTACCCTCACATTGGCAAATCCTGGGGGGTATGTCACAGCAATATCATACTCTGGAATTGACAATGTACTTGAAGGTGGAAATGAAGATATTGATAGAGGGTACTTTGACGTTGTTTTTGGCAAAACTTTTCAGAGAGTTCATGGGACAAGTTTCACCATCATAACAAGGAATGATAATATAGTGGAGGTTTCATTTTTAAGGACATGGCAACCTTCGATGGATAGTTCAAGTGTCCCTATAAATATAGACCAAAGGTATATTGTACGAAGAGGCGATTCAGGATTTTATACTTACGTGATATTTGAACGACCGAAAGGATTTCCCGCCATATCAGTTGATCAAATAAGGACTGTTTTTAAGCCCAAAGAAAACCTGTTCAATTATATGGCTGTATCAGATACTATTCAAAGAAGAATGCCAACAATGAGAGATAGAGAGACAGGTCAACCTCTAGCATTTCCTGAAGCTGTTTTGTTGACAAATCCATCTGATCCACAATTTAAAGGACAAGTGGATGATAAATACCAATACTCAAGTGAGAACCAATATAACCAAGTAAATGGATGGATTACTGCAGATTCTGAAAAGCCCGTGGGCTTCTGGATCATAACACCCAGTAATGAGTTCCGCAATGGTGGGCCTGTTAAGCAAGACCTCACATCTCATGTTGGCCCAATTTGTCTCTCTATGTTTGTGAGCACCCACTATGCTGGCAAAACGGTAACTATAGAATTCAAAGAAGGAGAAGCTTATAAAAAGGTCTTTGGCCCTATTTTTATTTACTTGAATTCTGCACCAAGTAAAGATAAATTCAAATCTCTATGGTCAGATGCTAAACAAAAGCTATCAAATGAAATCAAAAGTTGGCCTTATAATTTCATTCAATCAAAAGATTTCATTCCACCTAATCAACGGGGAACACTATCTGGACGATTACAAGTCCAAGATGGGGGAAACAAACCTCTAAATGCTAACAATGCTTACATTGGTTTAGCATTGCCTGGGCCTGCAGGGTCATGGCAAAGAGAAAGCAAGGGGTATCAATTTTGGATCCGATCAGACCCAAATGGAAATTTTGTTATAAAAAACATTGTTCCTGGGACATACAACTTATTTGCATGGGTTCCTGGCTACATTGGAGATTATATATATAAAGATCTAATTACAATTAAACCAGGAAGCACCATCAGCTTGAATTCACTTGTATATAATCCTCCAAGAAATGGCCCAACTCTTTGGGAAATTGGCATTCCAGATCGCTCAGCCGGCGAATTTTATGTACCAAACCCTTATGCTAACCTCATGAATAAATTATACATGAACGACAACAAATACAGATATAGGCAGTACGGTATATGGAGTCGTTATACCGATTTATATCCAAAAAGTGATCTTGTTTTCACGGTTGGTGTTAGTAAATGGCAAAAGGATTGGTTTTTCGCTCACGTTCCAAGGATCATAGGAAATAAAACATTCCAAGCAACCACATGGAGTGTTATATTTAAACTTGAAAACGTATTGACTGGAAATTATACATTACAATTAGCCCTTGCAAGTGCCTCTAATGCTGAAGTTCAGGTTTGGTTCAATAAAATGAGTGCTAGTCATCCTTACTTCACGACAAAGCGAATAGGCGACGATAACGCGGTACCAAGACATGGAATTCATGGATTATATTGGTTGTTTACAATAGAAGTACCTAGTATTCATTTGGTGAAAGGAATCAATACGGTATATTTGAGACAACCAAGATTTCAATCATTTTTTCAAGCAGTTCTATATGATTATATCCGTTTAGAAAGTCCACCAACAACCAAGTAA 2028 0.3743 MKMGRCMFKRFQLFLWFRMALQLCFMFGAYSEHISFRRSLSNAQSPVTLLNNPNQNQNSPQVVISNGIFTLTLANPGGYVTAISYSGIDNVLEGGNEDIDRGYFDVVFGKTFQRVHGTSFTIITRNDNIVEVSFLRTWQPSMDSSSVPINIDQRYIVRRGDSGFYTYVIFERPKGFPAISVDQIRTVFKPKENLFNYMAVSDTIQRRMPTMRDRETGQPLAFPEAVLLTNPSDPQFKGQVDDKYQYSSENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSMFVSTHYAGKTVTIEFKEGEAYKKVFGPIFIYLNSAPSKDKFKSLWSDAKQKLSNEIKSWPYNFIQSKDFIPPNQRGTLSGRLQVQDGGNKPLNANNAYIGLALPGPAGSWQRESKGYQFWIRSDPNGNFVIKNIVPGTYNLFAWVPGYIGDYIYKDLITIKPGSTISLNSLVYNPPRNGPTLWEIGIPDRSAGEFYVPNPYANLMNKLYMNDNKYRYRQYGIWSRYTDLYPKSDLVFTVGVSKWQKDWFFAHVPRIIGNKTFQATTWSVIFKLENVLTGNYTLQLALASASNAEVQVWFNKMSASHPYFTTKRIGDDNAVPRHGIHGLYWLFTIEVPSIHLVKGINTVYLRQPRFQSFFQAVLYDYIRLESPPTTK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01879 675 CDD RGL4_M 373 470 IPR029413 -
Trre10g01879 675 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 672 - -
Trre10g01879 675 SUPERFAMILY Starch-binding domain-like 369 469 IPR013784 GO:0030246
Trre10g01879 675 Gene3D - 54 347 IPR014718 GO:0030246
Trre10g01879 675 SUPERFAMILY Galactose mutarotase-like 57 335 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre10g01879 675 Gene3D - 369 469 - -
Trre10g01879 675 Pfam Polysaccharide lyase family 4, domain II 394 467 IPR029413 -
Trre10g01879 675 CDD RGL4_N 62 339 - -
Trre10g01879 675 Gene3D - 478 669 - -
Trre10g01879 675 CDD RGL4_C 482 669 - -
Trre10g01879 675 Pfam Rhamnogalacturonate lyase family 55 240 IPR010325 -
Trre10g01879 675 Pfam Polysaccharide lyase family 4, domain III 480 668 IPR029411 -
Trre10g01879 675 SUPERFAMILY Galactose-binding domain-like 477 669 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01879 Trre-Chr10 17744985 17753450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01879 61 671 Polysaccharide Lyase AT1G09890 52.970 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01879 K18195 - gmx:100781089 857.44