Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01870 ATGAAATCAGTGATTGAGAGATATAACAGTTGCAAGGAAGACCAACAAGTGACAAATCAAGAATCTGAACTCAAGTTTTGGCAAAGGGAAGCAGACATTTTAAGGCAGCAACTACAAACTCTACAAGAAAATCATCGGCAAATGATGGGAGAACAGCTTTACGGTTTGAGTATCCGAAACCTACAAGATTTAGAGAGCCAACTGGAACTCAGTCTCCAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGGAAGGGAAGCCTAATCCATCAAGAAAATGTGGAACTCTATAAGAAGGTCTATGGCACATCAGATACAGCAGCAACTGCGACAAGCAAAAACGCATTTGTTCAATTTCCGTATGGTGTTTGCGGAGGAGGAGAATGTCCACAAACTTTATTTAACCTTCAGTTATGTCCACCTGAGCAAGAACAGTACTGTGAGACTTCAGGCAGTGGAAGTGCAACAAAATGA 498 0.4137 MKSVIERYNSCKEDQQVTNQESELKFWQREADILRQQLQTLQENHRQMMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGSLIHQENVELYKKVYGTSDTAATATSKNAFVQFPYGVCGGGECPQTLFNLQLCPPEQEQYCETSGSGSATK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01870 165 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre10g01870 165 Pfam K-box region 18 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre10g01870 165 Coils Coil 17 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01870 Trre-Chr10 17586228 17588964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01870 1 160 MADS-box Gene Family AT2G22630 48.571 1.61e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01870 K09264 - gmx:100795778 216.083