LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g01863	ATGATGGAGCTACAAGTTATTTGGTTAATAAGATTGGTTGTGGCATGTGTTCTTTGTCTGTGTATATTTATCAGATCAGCTTCTTCTGCAATTGAAGGATTTAAGAGCATAGCATGCTGTGCTGATAAAGATTACACAGATCCATTGACAACCTTAAATTATACAACAGATTACCATTGGTACTCTGATAAAAGAAGTTGCAGACAAATACCAGAAATTGTGTTAAGCCACAGAAGCAATGAAAACGTTCGACTGTTTGATATAGATGAAGGAAAGAGATGTTACAAATTGTCAACAATTAAGGATCAAGTATATCTGATAAGGGGAATATTTCCATTTGACAGTTCAAATTCTTCGTTTTATGTTTCAATTGGGGTAACAGAAATAGGCGAAGTAAGATCGTCTGGGCTCCAAGACTTTGAAATTGAGGGAGTTTTCAAAGCCACCAAAGACTACATAGATTTTTGTGTATTGAAGGAGGAGGTCAATCCCTTTATTTCTCAGCTTGAATTAAGGCCATTACCTGAAGAATACCTACATGATTTCGGTACCAGTGTTTTAAAACTGATAAGCAGAAATAATCTTCGCGGCACAAAAGATGTTATCAGGTTCCCAGTTGACCAAAATGATAGAATCTGGAAAGCAACTTCAACTCCATCATCTGCCCTTCCACTTTCTTCCAATATCAGCAATGTTGACCTCAAAGGCAGTGTGACACCTCCTTTAGATGTCCTACAAACAGCTCTTACTCACTCTGAGCGATTGGTGTTCATCCATGATGACCTTGAGACCGATGATTATGAATACTCTGTGTTTCTCTACTTCCATGAGTTAAATAGCACTCTCAAAGCAGGAGAAAGGGTGTTTGACATATATCTCAACAATGAGATTAAAAAGGCGGGTTTTGATGTACTGCAAGGAGGATCCAAGTACAATTACACTGTCTTGAACATTTCAGCAAATGGATCACTCAATATAACCTTAGTCAAAACATCTGGATCTAAGTTTGGACCCCTTTTGAATGCCTATGAGATCCTGCAGGCGCGACCATGGATCGACGAGACCAACCAAACAGATCTGGTACTTATTCAGAAGATGAGAAAAGAACTGCTGCTGCAAAACCAAGACAATGAAGCATTGGAGAGTTGGAGTGGAGACCCTTGTATGCTTTTCCCGTGGAAGGGAATAGAATGTGACAGTTCAAATAGTTCATCTGTTATCACTAAGCTGGATCTTTCCTCAAATAATCTCAAAGGAACAATTCCCTCCAGTGTCACTAAGATGAACAATTTACAAATACTGAACCTGAGCCACAACCATTTTGATGGTTATATCCCCTCGTTTCCACCCTCCTCCTTGCTGATATCAGTAGATCTAAGCTACAATGACCTTATGGGGCAGCTTCCAGACTCAATGATCTCACTGCCGCATTTAAAATCATTATATTTTGGCTGCAATCAACACATGAGCGATGAGGATCAAGCCAAATTGAATAGTTCACTACTAATCAATACAGATTATGGGAGATGCAAAGCAAAAAAACCGAAATTTGGACAAGTTTTCGTGATTGGAGCTATTACAAGTGGATCAGTTTTGATTACTTTGGCTGCTGTTGGAATTTTTTTTGTTTGCCGTTATAGACACAAGTCAATTCCTTTGGAAGGATTTGGTGGAAAGAACTACCCAATGAATATAATTTTCTCATTACCAAGCAAAGACGATTTCTTCATAAAGTCTGTATCAGTTAAACCGTTCACTTTGGAGTATATAGAACTGGCTACAGAAAACTACAAAACTTTGATAGGTGAAGGAGGATTTGGCTCTGTTTACCGAGGCACTTTAGACGATGGTCAAGAAGTGGCAGTGAAAGTCCGGTCGGCAACATCAACTCAGGGAACCCGAGAATTCGATAATGAGCTAAACCTACTTTCAGCTATACAACATGAGAACTTGGTGCCTCTTCTTGGTTACTGTAATGAGTATGATCAACAAATTCTCGTGTATCCTTTCATGTCCAATGGCTCTTTGCTAGATAGACTATATGGGGAACCAGCAAAAAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTAGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCTGGACGCTCTGTAATACACAGGGACGTAAAATCAAGCAATATACTGCTTGACAATAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTTTCAAAATATGCTCCTCAGGAAGGAGACAGTTATGTTTCCCTTGAAGTAAGAGGAACAGCAGGTTATCTGGATCCTGAGTACTACAAAACCCAACAATTATCTGAAAAGAGTGATGTTTATAGCTTTGGTGTGGTTCTACTTGAAATTGTAAGCGGAAGGGAACCTCTCAACATAAAGAGACCACGGATTGAGTGGAGCTTGGTTGAATGGGCTAAACCATACATAAGAGCATCAAAGGTGGATGAAATTGTAGATCCTGGCATCAAGGGAGGATATCATGCAGAGGCACTGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTACTCAACATATAGGCCATGCATGGTTGACATTGTCCGCGAGTTGGAGGATGCTCTCATTATCGAAAACAATGCATCTGAATACATGAAATCTATTGACAGCCTCGGAGGATCCAACCGTTACTCAATTGTCATGGACAAAAGGGCGCTGCCTTCAACTACATCTACAACAGAATCAACCATCACAACCCAAACCTTATCACACCCTCAACCGAGATAG	2775	0.4007	MMELQVIWLIRLVVACVLCLCIFIRSASSAIEGFKSIACCADKDYTDPLTTLNYTTDYHWYSDKRSCRQIPEIVLSHRSNENVRLFDIDEGKRCYKLSTIKDQVYLIRGIFPFDSSNSSFYVSIGVTEIGEVRSSGLQDFEIEGVFKATKDYIDFCVLKEEVNPFISQLELRPLPEEYLHDFGTSVLKLISRNNLRGTKDVIRFPVDQNDRIWKATSTPSSALPLSSNISNVDLKGSVTPPLDVLQTALTHSERLVFIHDDLETDDYEYSVFLYFHELNSTLKAGERVFDIYLNNEIKKAGFDVLQGGSKYNYTVLNISANGSLNITLVKTSGSKFGPLLNAYEILQARPWIDETNQTDLVLIQKMRKELLLQNQDNEALESWSGDPCMLFPWKGIECDSSNSSSVITKLDLSSNNLKGTIPSSVTKMNNLQILNLSHNHFDGYIPSFPPSSLLISVDLSYNDLMGQLPDSMISLPHLKSLYFGCNQHMSDEDQAKLNSSLLINTDYGRCKAKKPKFGQVFVIGAITSGSVLITLAAVGIFFVCRYRHKSIPLEGFGGKNYPMNIIFSLPSKDDFFIKSVSVKPFTLEYIELATENYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDNSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVYSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTTESTITTQTLSHPQPR	924

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g01863	924	Pfam	Malectin-like domain	42	346	IPR024788	-
	Trre10g01863	924	SUPERFAMILY	L domain-like	379	489	-	-
	Trre10g01863	924	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	717	729	IPR008271	GO:0004672\|GO:0006468
	Trre10g01863	924	ProSitePatterns	Protein kinases ATP-binding region signature.	601	623	IPR017441	GO:0005524
	Trre10g01863	924	FunFam	Leucine-rich repeat receptor-like kinase	365	490	-	-
	Trre10g01863	924	Pfam	Protein tyrosine and serine/threonine kinase	598	867	IPR001245	GO:0004672\|GO:0006468
	Trre10g01863	924	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	671	887	-	-
	Trre10g01863	924	SMART	serkin_6	595	872	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g01863	924	Gene3D	-	194	349	-	-
	Trre10g01863	924	CDD	STKc_IRAK	601	868	-	-
	Trre10g01863	924	SUPERFAMILY	Protein kinase-like (PK-like)	575	867	IPR011009	-
	Trre10g01863	924	Gene3D	Phosphorylase Kinase; domain 1	567	670	-	-
	Trre10g01863	924	Gene3D	Ribonuclease Inhibitor	362	508	IPR032675	-
	Trre10g01863	924	FunFam	Nodulation receptor kinase	567	670	-	-
	Trre10g01863	924	Pfam	Leucine rich repeat N-terminal domain	363	399	IPR013210	-
	Trre10g01863	924	PANTHER	OS07G0107800 PROTEIN-RELATED	36	871	-	-
	Trre10g01863	924	MobiDBLite	consensus disorder prediction	904	924	-	-
	Trre10g01863	924	Gene3D	Transferase(Phosphotransferase) domain 1	671	887	-	-
	Trre10g01863	924	ProSiteProfiles	Protein kinase domain profile.	595	872	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g01863	Trre-Chr10	17531670	17537394	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g01863	9	874	Receptor kinase-like Gene Family	AT1G67720	33.742	6.09e-138	433

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Trre10g01863		Malectin_like	1.8e-45	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g01863	-		-	gmx:100781986	1457.2