Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01862 ATGAACAAACAACCTACAAAAAGTCATGAAACAGTGATTGACATAAAACATAAGCCTGTGAGTTTCACTGGAGGACTTGAATTTGAATCTCTTACTTACACAGTCATAAAGAAGAAGAAAATCGATGGAAATTGGTCGAACGAAGACGTTGATTTGTTGCATGATATAACTGGTTATGCACCAAAAGGTAGTATCACTGCAGTTATGGGACCAAGTGGTGCTGGAAAATCAACTTTGTTGGATGGACTTGCTGGAAGAATTGCAAGTGGAAGTCTTAAAGGGAAAGTTTCATTGGATGGAAATAGTGTGAATGCAAGTTTGATTAAAAGAACTTCTGCTTATATTATGCAAGAAGATAGGCTTTTTCCTATGCTTACTGTTTATGAGACTTTGATGTTTGCTGCTGACTTCAGATTAGGGCCACTTTCAGTTGTTGATAAGATGCAGAGAGTTGAGAAGCTTATTGAACAGCTTGGATTATCTTATTCTAGGAACACCTACATAGGAGATGAAGGAACAAGAGGAATCTCAGGAGGAGAACGTCGCAGAGTCTCAATCGGGGTAGACATAATCCATGGACCTTCACTCCTTTTCCTAGATGAACCAACTTCAGGACTAGACTCAACAAGTGCTCTTAGTGTGATTGAAAAAGTACATGACATTGCAAGAAATGGTAGCACAGTTATTCTCACAATCCACCAACCTTCATCAAGAATTCAGCTTCTCCTTGATCATCTCATCATCCTTGCTAGAGGACAACTCATGTTTCAAGGATCATTTAAAGATGTAACTCTCCATTTGAACCGAATGGGACGAAAAGTACCTAAAGGAGAGAATCCAATTGAGAATCTAATTGATGTGATACAAGAGTATGATCAGTGTGATGTTGTTGGTGTTGAGGTGTTAGCTGAGTTTGCAAAAACAGGAATGAAACCACCTCTTTTGAATGACATGGAGGAAATTTCGATGTCGAGATCTGTTGCACCTTCTCCTATGCATAGAGGATCTAGATTTGAGGGGAAATCTGAAGACTTTTCTTACTCATCACAAGTTAGTAGAAGGAGTTTGAATGATGAGTTTGATCATAGTATTAGAAGTTCATATAATAACACACCAATGTCATGGAATGCTAGCAACAGTGCAGCTTTCTTGAAATTCACACCCTCAAGACTTAAAAATGAGAAAAAGGTGCAGAAGCCTGCAAGCCAAGCTTCCCCCGGCTACTACACATACTCGAGCGAAATCCTTCCAGCAACACCAACACCACATAGCAGTGACTATGTAGTGGATGAGAGTGACTACCTCACACCAGCAAATGGCACACCAGAACATCTAGGCCCAAAGTTTTCGAATTCCTACATAGGAGAGACATGGATCCTAATGCGTCGCAACTTCATAAACATACGGCGTACCCCTGAGCTTTTCCTGTCAAGACTAATGGTCCTTACCTTCATGGGAATCATGATGGCCACAATGTTCAAAAATCCAAAAGACACCTTACAAGGAATCACGAACCGTCTCAGCTTCTTTATCTTCACAGTATGTCTCTTTTTCTTCTCTTCCAATGACGCCGTCCCTGCTTTCATCCAAGAGAGGTTCATTTTCATCCGCGAAACTTCGCACAATGCTTATCGAGCTTCAACTTACACCATAGCTAGCTTAATCACTTACATGCCATTTCTTGCACTCCAAGCTTTAACTTATGCAGTCATTGTTTGGTTTGCTTTAAAACTTAGAGGCCCTTTTCTATACTTCTTCCTTGTTCTCTTCATTTCTCTTCTTTCCACAAATTCGTTTGTTGTGTTTGTGAGTTCTGTGGTTCCAAACTACATCTTGGGCTATGCTGCAGTCATTGCCTTCACTGCATTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCGAGGATATTCCGAAATATTGGCGTTGGATGAATAAGATTTCGACAATGACATATCCTTATGAAGGACTCTTGATGAATGAGTATCAAACTAATCATGTTTTTGGGAACAATGATGGTGTACCTGTTACAGGTATCGATATCTTGAATAGTCTTCATATTGGTATTGAAGAGGTTAAAAAGAGGAACAATGTGCTTATAATGTTAGGTTGGGCTGTTCTATATAGGATTTTATTTTACATTATTCTTCGTTTTGCATCGAAAAATCAAAGGTCCTAG 2178 0.3953 MNKQPTKSHETVIDIKHKPVSFTGGLEFESLTYTVIKKKKIDGNWSNEDVDLLHDITGYAPKGSITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGNSVNASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSVVDKMQRVEKLIEQLGLSYSRNTYIGDEGTRGISGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSALSVIEKVHDIARNGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSFKDVTLHLNRMGRKVPKGENPIENLIDVIQEYDQCDVVGVEVLAEFAKTGMKPPLLNDMEEISMSRSVAPSPMHRGSRFEGKSEDFSYSSQVSRRSLNDEFDHSIRSSYNNTPMSWNASNSAAFLKFTPSRLKNEKKVQKPASQASPGYYTYSSEILPATPTPHSSDYVVDESDYLTPANGTPEHLGPKFSNSYIGETWILMRRNFINIRRTPELFLSRLMVLTFMGIMMATMFKNPKDTLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIASLITYMPFLALQALTYAVIVWFALKLRGPFLYFFLVLFISLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSEDIPKYWRWMNKISTMTYPYEGLLMNEYQTNHVFGNNDGVPVTGIDILNSLHIGIEEVKKRNNVLIMLGWAVLYRILFYIILRFASKNQRS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01862 725 CDD ABCG_EPDR 26 258 - -
Trre10g01862 725 Gene3D - 27 271 IPR027417 -
Trre10g01862 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 276 IPR003439 GO:0005524
Trre10g01862 725 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524|GO:0016887
Trre10g01862 725 FunFam ABC transporter G family member 6 36 274 - -
Trre10g01862 725 Pfam ABC transporter 53 204 IPR003439 GO:0005524
Trre10g01862 725 SMART AAA_5 62 260 IPR003593 GO:0016887
Trre10g01862 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 711 - -
Trre10g01862 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 266 IPR027417 -
Trre10g01862 725 Pfam ABC-2 type transporter 457 662 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01862 Trre-Chr10 17523170 17526632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01862 15 290 Calmodulin-binding Proteins AT2G36910 26.502 1.65e-13 72.8