Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01856 ATGACTAGGAAGAAGGTGAAACTTGCATTTATCGTTGATGATTTAGCAAGGAAGGCAACCTATAAGAAAAGAAAGATGGGCATTATCAAGAAGGTGAGCGAGCTAACCATTCTTTGCGGTATTCCAGCATGTGCTGTAATTTCAAATCCTTTTGGTTCTAAACCAGAGGTGTGGCCAAATCAAGCGGAAGCCAAGCAAATTATTGAGAGGTATCAGAATTCTTCTGTGATAGATGGGGCGAAAAATGTGAACCAAGAGAGCTTCCTCTTGCAGAGGATCACTAAAGCCAGAGAGCAACTTAAAAAGCAAAAGCACGACATTCGTGAAAAGGAGCTGACCATTCGTATGATTGGGTACATGAAAAACAAACAACTGCCTGATGATTTATCTGTTTCAGATTTGAAAGAATTTGATAACCTAATTGAGAAAAATCTGAAAGAAACTGATAGCAAGATTGTTGAGCTAAATTGA 471 0.3864 MTRKKVKLAFIVDDLARKATYKKRKMGIIKKVSELTILCGIPACAVISNPFGSKPEVWPNQAEAKQIIERYQNSSVIDGAKNVNQESFLLQRITKAREQLKKQKHDIREKELTIRMIGYMKNKQLPDDLSVSDLKEFDNLIEKNLKETDSKIVELN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01856 156 Coils Coil 90 113 - -
Trre10g01856 156 PANTHER MADS BOX PROTEIN 3 152 - -
Trre10g01856 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre10g01856 156 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Trre10g01856 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Trre10g01856 156 CDD MADS_SRF_like 2 59 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre10g01856 156 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre10g01856 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre10g01856 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre10g01856 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01856 Trre-Chr10 17431074 17431544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01856 1 152 MADS-box Gene Family AT5G26630 43.791 5.75e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre10g01856 SRF-TF 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01856 - - gmx:100792290 198.749