Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01855 ATGGAGCTTTCTCAACTTGGTTATCTTGAAGAGCTATTAGCTCCAAGAAAAGACACATGGAATACTTTATCAACTGGTTTGAATGAACTACTACTCCCAAATGGTTGGTCCTTTGACTCATTTGATGAAAATCTACTCATAAATCCATCTTTAAATCCATCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCTACAGCATCATACCCTTTTGTTGATGGGTTCTCAGTGCCAGAGCTTGATGATTCAGCACCAATTTTACCTCATGAAGGTGTTGAAGAGATTGGTTTTGTTGGAAGTGAGAATAAGAGTTTGGAACAAGGGAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAGATTCCTGTTTTTAATATGGGTTTGTGTGGTGAGAAAAAAGCTAAGTCTAAAAGGGTTGAAGGACAACCTTCAAAGAATCTCATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGATAGGCTTTCTATGCTTAGGTCAATTGTCCCTAAAATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACAATTGATTACATGAAAGAGCTTTTAGAAAGGATTAGTAAGTTGCAAGAAGAAATGGATGAGGAAGGAACAAATCAAATAAACCTTTTGGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAAGACACAAGGATTAGTATCTGCTGTGCTACAAAGCCAGGATTATTACTATCAACTGTGAACACATTGGAAGCATTAGGCCTTGAGATTCATCAATGTGTCATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCCGAGGTAAATGGTCAGAGAAATTGTATGAATCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGATGTCTTTAA 972 0.3755 MELSQLGYLEELLAPRKDTWNTLSTGLNELLLPNGWSFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDATASYPFVDGFSVPELDDSAPILPHEGVEEIGFVGSENKSLEQGKISCKVEEQVSEIPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEMDEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVNGQRNCMNPEEIKQSLFRNAGYGGRCL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01855 323 Gene3D - 140 214 IPR036638 GO:0046983
Trre10g01855 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 112 317 - -
Trre10g01855 323 Coils Coil 196 216 - -
Trre10g01855 323 Pfam Helix-loop-helix DNA-binding domain 156 199 IPR011598 GO:0046983
Trre10g01855 323 CDD ACT_UUR-ACR-like 249 290 - -
Trre10g01855 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 214 IPR036638 GO:0046983
Trre10g01855 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Trre10g01855 323 SMART finulus 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01855 Trre-Chr10 17408532 17410539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01855 11 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 47.839 1.20e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g01855 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01855 - - gmx:100806571 531.561