Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01854 ATGGAGCTTTCTCAACTTGGTTATCTTGAAGAGCTATTAGCTCCAAGAAAAGACACATGGAATACTTTATCAACTGGTTTGAATGAACTACTACTCCCAAATGGTTGGTCCTTTGACTCATTTGATGAAAATCTACTCATAAATCCATCTTTAAATCCATCATTTGCTTCATTCTCAACACCATTAGACCATAGATTTGAATGTCCTTATGGAACTGATGCTACAGCATCATACCCTTTTGTTGATGGGTTCTCAGTGCCAGAGCTTGATGATTCAGCACCAATTTTACCTCATGAAGGTGTTGAAGAGATTGGTTTTGTTGGAAGTGAGAATAAGAGTTTGGAACAAGGGAAAATCAGCTGCAAAGTTGAGGAACAAGTTAGTGAGATTCCTGTTTTTAATATGGGTTTGTGTGGTGAGAAAAAAGCTAAGTCTAAAAGGGTTGAAGGACAACCTTCAAAGAATCTCATGGCTGAAAGAAGGAGAAGAAAGCGTTTGAATGATAGGCTTTCTATGCTTAGGTCAATTGTCCCTAAAATCAGCAAGATGGACAGGACATCAATTCTTGGAGATACAATTGATTACATGAAAGAGCTTTTAGAAAGGATTAGTAAGTTGCAAGAAGAAATGGATGAGGAAGGAACAAATCAAATAAACCTTTTGGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTAATGTTTGATGTTGAGAGGAGAGACCAAGACACAAGGATTAGTATCTGCTGTGCTACAAAGCCAGGATTATTACTATCAACTGTGAACACATTGGAAGCATTAGGCCTTGAGATTCATCAATGTGTCATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCCGAGGTAAATGGTCAGAGAAATTGTATGAATCCTGAAGAGATAAAGCAATCACTATTCAGGAATGCAGGTTATGGTGGGAGATGTCTTTAA 954 0.3742 MELSQLGYLEELLAPRKDTWNTLSTGLNELLLPNGWSFDSFDENLLINPSLNPSFASFSTPLDHRFECPYGTDATASYPFVDGFSVPELDDSAPILPHEGVEEIGFVGSENKSLEQGKISCKVEEQVSEIPVFNMGLCGEKKAKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEEMDEEGTNQINLLGISKELKPNEVMFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVNGQRNCMNPEEIKQSLFRNAGYGGRCL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01854 317 Gene3D - 140 214 IPR036638 GO:0046983
Trre10g01854 317 Coils Coil 196 216 - -
Trre10g01854 317 CDD ACT_UUR-ACR-like 243 284 - -
Trre10g01854 317 Pfam Helix-loop-helix DNA-binding domain 156 199 IPR011598 GO:0046983
Trre10g01854 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 214 IPR036638 GO:0046983
Trre10g01854 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Trre10g01854 317 SMART finulus 156 205 IPR011598 GO:0046983
Trre10g01854 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 112 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01854 Trre-Chr10 17408532 17410539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01854 11 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 46.491 1.49e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g01854 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01854 - - gmx:100806571 513.072