Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g01846 ATGTCTCCGGCAGCGGTGGTTACGGAGGAGGAAGGGCGGAACAAACTGGTTTCTGCTTCTTCGCCATCTTTAGATTGTTTTTCTCAGAATGGTGTCGTTGATTTGAAAGAACGGAATTACTTGGGATTGTCAGATTGTTCATCAGTGGATAGTTGTGATTCAACTCTCCCGAGCTTGTGTGATGAGAAAAAGGTGAACTTGAATTTGAAAGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAATCGCCTGAAAGGGATTTGGATTTTTATTCGACAAAACTTGATGAGAAACCGTTGTTCCCTTTGCTTCCTGCAAAAGATGGAATCCAGAAGACTGTGGTTTCGGGTAACAAGAGAGGATTTGCTGATACTGTTGATGGGTTTTCTCAGGGGAAGTTTAATGGTAATACTGGGATTAATGTGATGCTATCGCCTAGACCTGTTGTAGCTCAGCCAAACACAGTGAAAGAAATGCCGACTAAGGTGTTGCAGGAAAGGCCTTGTGCAGCTAGAGGAACTACTGGTCATAATCATGCAGGTGCTGCTTCTATCACTGGCTCCCAGCCAGCATCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTGCTTCCAAAAACAACAACGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTTAGCATGGACGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAACTTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGTTGTTTTACCCTAGGCCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAGCTAAGGGACTTTTTGCATGGTTCAGAATATGTTCTAACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGATACTTGCAGAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCAATGGAAAAGTCCAAAAGCAGGAGTTAG 1050 0.4448 MSPAAVVTEEEGRNKLVSASSPSLDCFSQNGVVDLKERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPERDLDFYSTKLDEKPLFPLLPAKDGIQKTVVSGNKRGFADTVDGFSQGKFNGNTGINVMLSPRPVVAQPNTVKEMPTKVLQERPCAARGTTGHNHAGAASITGSQPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMMSESKLRDFLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g01846 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 336 IPR003311 GO:0005634|GO:0006355
Trre10g01846 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Trre10g01846 349 MobiDBLite consensus disorder prediction 172 193 - -
Trre10g01846 349 FunFam Auxin-responsive protein 224 341 - -
Trre10g01846 349 Gene3D - 226 343 - -
Trre10g01846 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Trre10g01846 349 Pfam AUX/IAA family 72 340 IPR033389 -
Trre10g01846 349 MobiDBLite consensus disorder prediction 179 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g01846 Trre-Chr10 17305938 17309558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g01846 231 334 B3 DNA Binding Superfamily AT5G37020 31.731 1.23e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre10g01846 AUX_IAA 3.6e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g01846 K14484 - gmx:547502 557.755